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Figure 2 | BMC Cancer

Figure 2

From: Pathway aberrations of murine melanoma cells observed in Paired-End diTag transcriptomes

Figure 2

PET clustering and library comparison. PETs are clustered first based on their annotated known genes, if available. PETs that cannot be annotated to any known gene are clustered based on their chromosome locations (genome coordinates). Library comparisons can be conducted at various levels including PET, cluster, gene, and TSS/PAS variant. The PET level comparison measures the degree of overlap between unique PETs across two datasets. The cluster level comparison evaluates the similarity between two libraries for both known gene clusters and novel clusters, while the gene level comparison considers only known gene clusters. The TSS/PAS variant comparison compares alternative TSSs and PASs present in the known gene clusters. TSS, transcription start site; PAS, polyadenylation site; chrLoc, chromosome location.

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