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Table 1 Recurrent amplicons in breast tumors with examples of some candidate oncogenes

From: Breast tumor copy number aberration phenotypes and genomic instability

Tumors Chr. Proximal flanking clone Start (bp) Distal flanking clone End (bp) Size (Mb) Candidate Genes
S0257; S1508 1 RP11-235B24 50120611 CTD-2010C4 64641284 14.5 JUN
S0021; S0065; S0127; S0132; S1534; S1539 8 RP11-210F15 36452678 RP11-262I23 39744917 3.3 BAG1; FGFR1; TACC1
S0013; S0257; S1598 8 RP11-128G18 127638988 RP11-227F7 131013284 3.4 MYC; WISP1
S0132; S0394; S1524 11 CTD-2115C17 32421376 RP11-18B9 40252688 7.8 TRAF6
S0050; S0065; S0081; S0132; S0252; S0303; S1534; S1539; S1598 11 CTD-2080I19 68483419 RP11-98G24 76964746 8.5 CCND1; FGF4; EMS1; PAK1
S0184; S1508 12 12pter 0 RP11-272L6 5221281 5.2 CCND2; FGF6; DYRK4
S0051; S0052; S0122; S1522 12 RP11-18B8 63882712 RP11-92P22 74052886 10.2 MDM2; DYRK2; YEATS4; HELB;
S0021; S0043; S0052; S0059; S0257; S0394; S1511; S1522; S1526; S1539 17 RP11-58O8 34147697 RP11-87N6 38680670 4.5 STARD3; ERBB2; GRB7; TOP2A; MMP28
S0043; S0104; S0394 17 RP11-110H20 47546526 RP11-481C4 49705574 2.2 IMP-1; ITGA3
S0001; S0021; S0043; S0104; S1508; S1511 17 RP5-1073F15 58499308 CTB-244K7 64939230 6.4 BRIP1; GH1; GH2; MAP3K3
S0127; S0257; S0269 18 RP11-7E5 10817140 RP11-10G8 17272427 6.5 PTPN2
S0021; S0043; S0050; S0051; S0055; S0059; S0122; S1522; S1545; S1598 20 RP11-169A6 44424925 RMC20P179 62702798 18.3 CYP24; ZNF217; STK6