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Table 1 Primers and amplification conditions of 8 selected putative genes

From: A transcriptome anatomy of human colorectal cancers

Gene Name

Primers

PCR Fragments (bp)

Annealing Temperature(C)

Cycles

TWISTNB

ATAACATCAAAGTTGTGGGAGA

196

48

35

 

TCAGGTTTAGGAATGGAGGC

   

YPEL2

ATCGAAGACTTTCCAGGCATAT

344

57

36

 

ATCAGTCCCAGCCATTGTCC

   

YPEL5

TAAACCTGGAGACTCGGGTGG

205

59

35

 

AGCGGTTGGTCAGGATCGTAT

   

Sep6

AAGGTTGCCGAACTGTCC

280

59

36

 

AAGCCAACTGTGCTAACGA

   

Sep4

CGAAAGTCCGTGAAGAAAG

221

59

34

 

GTGTCCACAATGGTGAGCC

   

CBX3

ATAATTGGTGCCACAGACA

325

53

31

 

AACAACTCTTCCAACGCTA

   

SOX9

AGGTGCTCAAAGGCTACGACT

360

63

32

 

AGATGTGCGTCTGCTCCGTG

   

β-catenin

TCTTGGCTATTACGACAG

459

58

32

 

CCTCTATACCACCCACTT