|  | Primer sequence (5' > 3') |  |  | |
---|---|---|---|---|---|
Gene | Fragment | Forward | Reverse | Amplicon (bp) | PCR Conditions* |
NTHL1 | 1 | GTAGTTCTGTGCCGCCCTCT | CAGCCTGCAGCCCCTATC | 270 | 68–60 TD, 1.7M B |
 | 2A | ATGAACGAGTGAGGGGTGAG | AGCTGTTGCTGCCAGTCC | 244 | 68–60 TD, 1.7M B |
 | 2B | AGAGACTGCGTGTGGCCTAT | GAGGGTGCCAGCCAAAAG | 284 | 68–60 TD, 1M B |
 | 3 | CAGGGAATCACCCAGGAC | AGGTCTCTCTCAGGCCACTG | 279 | 68–60 TD, 1M B |
 | 4 | GCTGCATCCTCCCAGGTT | CACAGGTCACAAGGATGTGG | 298 | 68–60 TD |
 | 5 | GGCTAGGCTGGTGGAGTGT | GGGTCAGTGCTGACAGAGG | 225 | 68–60 TD |
 | 6 | GGCTTCCTAGGGAGAAGAGC | GTGGCTTCCTGAAGCGTAAA | 266 | 68–60 TD |
NEIL1 | 1A | CAGCCGCTACCTCACAAAGT | GCTGAAGCTGAGATGCGGTA | 232 | 68–60 TD |
 | 1B | CAGCCAGTTTGTGAATGAGG | CCGTGTAAAAGCGCAGGT | 281 | 68–60 TD |
 | 1C | CCACTGGCCCTGGTCTTC | TTGGCCAAGAAGGCACTAAG | 295 | 68–60 TD, 1M B |
 | 2 | AGGTTCTCTGAGCCCCTCTC | GCTAGGCAGTGGGGAATGT | 263 | 68–60 TD |
 | 3 | GTGCCCACATTCCCCACT | CTAAGCTGGGGACACCTGAC | 208 | 68–60 TD |
 | 4 | CCCAAAGTCTGACCAAGCTC | CCCCAGGGTTACACAATCAT | 245 | 68–60 TD |
 | 5 | GAGCCTGCCCTCTGATCTCT | GGGGTCTCTGCCTGTGTG | 203 | 68–60 TD |
 | 6 | CACTGATCTGGATGGGTGTG | ATAGGGTGGAGAAGGGTGCT | 210 | 60–50 TD, 1M B |
 | 7 | AGCACCCTTCTCCACCCTAT | CCGCCCTCTTAGGGTAAGG | 238 | 68–60 TD |
 | 8 | CCAACCTCTGAACTGCTTTCT | TAGAGCCAGTTTCTGGGAGTG | 257 | 68–60 TD |
 | 9 | CGTGTACAAAGGTGGGAGAAA | AATTCAGACCCCCAGATGC | 216 | 68–60 TD |
NEIL2 | 1 | TGCTTGGCACCTGTTAAAGA | CCCTGAGACATATGGGGATAGA | 296 | 68–60 TD, 1M B |
 | 2A | AATATCCGCATTCCCCAGTT | GGGCGTCTCTCTCCAAATAC | 296 | 68–60 TD, 1M B |
 | 2B | GGGCAGAAGACCCTTGATG | TGACTATCAGAGCCCACGAA | 254 | 68–60 TD, 1M B |
 | 3 | CAGCCACAGGGTGTGCTCT | TCTGTGGACTCACCCCTTTC | 299 | 68–60 TD, 1M B |
 | 4A | GCCATGTGTCCTTTGTCCTT | GCCTCTGTAACCCATCTTCG | 290 | 68–60 TD, 1M B |
 | 4B | CGCAGCACACACAGGTCTAC | CCACATCCTCCTTTCTGGAC | 237 | 68–60 TD, 1M B |
MPG | 1 | GGTCCTAGGGGTGCTTCC | TGGCCTATGCTCTGGCTCT | 254 | 68–60 TD, 1.7M B |
 | 2A | GCTGTCTCCTATTCGGATGC | CCCTTTGGGCTTGAGAAATA | 248 | 68–60 TD, 1.7M B |
 | 2B | CACACAGCTCGTCCGATG | CAGTGACAGGCACTTCAGGA | 229 | 68–60 TD, 1M B |
 | 3A | TGGGCACTGTTAGGGTGAGT | ACCCTGGCTGGAGATGTTC | 273 | 68–60 TD, 1M B |
 | 3B | CTAGTCCGGCGACTTCCTAA | CCCCACCTCAGTCCTCCTA | 291 | 68–60 TD, 1M B |
 | 4A | GCAGAGAGGACAGGAGCCTA | CCAGCCATACAGCTTCATCC | 267 | 68–60 TD, 1M B |
 | 4B | GAGACCATGCGTCAGCTTC | ACATAGAAGCGGAGGGGTTT | 266 | 68–60 TD, 1M B |
 | 4C | GATGAAGCTGTATGGCTGGAG | GCTCTGGCTAAGGCACAGTT | 270 | 68–60 TD, 1M B |
TDG | 1 | TCTCTGGGGTTGTCTTACCG | AGCCTGCCCAGCAGTGAG | 180 | 68–60 TD, 1M B |
 | 2 | TGATCATTTGGATTTACATTTGG | GGCTGATCCGATGTTGAACT | 252 | 68–60 TD, 1M B |
 | 3A | TTTTCTGGGAAAGCTGCTAAA | GGGGAGAGTCTTGGTCAGAA | 279 | 60–50 TD |
 | 3B | CTGGCAAGTCTGCAAAATCA | GGTCCTTTTCAGCAAAATGC | 252 | 60–50 TD |
 | 4 | GATGAAATGTCTAATTGTTTTGTTTT | CACACAGAACATGAAACACGA | 233 | 60–50 TD |
 | 5 | GGCTGCACTGAGCCATGAT | GGTTCCAACCCATAAAAGCA | 271 | 68–50 TD |
 | 6 | TCAAGCTGAGCTCAACAAATG | CAAACATATTTACATTGCCCATAA | 262 | 68–60 TD |
 | 7 | TCAGCCACGAATAGCAGTGT | TCACAATGGATAGGACAAATAAGG | 288 | 68–60 TD |
 | 8A | CAAGTTATTAACCCAAATAAAGACAAA | TGAATAAAAGGAATGAGGACAGTAA | 300 | 60–50 TD, 1M B |
 | 8B | CATCCAGTGCAAGATGTGCT | CACAAAATGAATAAAAGGAATGAGG | 190 | 68–60 TD, 1M B |
 | 9 | CAAGAAAAAGAATTGTTCATGATTTC | CCTGACCAAACCGTCTTTGA | 267 | 68–60 TD |
 | 10 | GGCGATAGAGTAAGACCCAGTC | GGTTCTACTTGTTGACAACTGCAT | 298 | 68–60 TD |
UNG | 1 | AATTGCTGACCGCCACAG | CCTTCCTCCCCCTTCACC | 262 | 68–60 TD, 1M B |
 | 2A | GGGCTCTTACTGTCCGCTTT | CTCTGGATCCGGTCCAACT | 240 | 68–60 TD, 1M B |
 | 2B | GACCACTTGCAGGCCATC | GGCCGGCTACACTAACAAGA | 296 | 68–60 TD, 1M B |
 | 3 | TTGAATTCTTATGGTTTCCAATGA | TGTGGCTTAACTCCAGTGTCC | 240 | 68–60 TD, 1M B |
 | 4 | CAGGGTCTGTGCTGCTTACA | AACAGTGCCCCAGATAGTCC | 251 | 68–60 TD, 1M B |
 | 5A | CAAGGGCTGGCTGTAACTTC | TAGCAGTCGCTGGCTTACCT | 218 | 68–60 TD, 1M B |
 | 5B | GGCTTGCTTTCAGTTTGGAG | CAGCTATGGTGGCTCATGC | 288 | 68–60 TD, 1M B |
 | 6 | TGCCTGAGCCTACATTTAACC | GCAGGGACTCCTAGAATTCTTTA | 299 | 60–50 TD, 1M B |
 | 7 | CCACTGCAGCAAGACTCTGT | GGAACTTCGTAACTGGCAAA |  | 60–50 TD |
SMUG1 | 1A | CTCTGTGGCTGAGGGTTGAT | TTGTAGATGATGCCCACAGG | 233 | 68–50 TD, 1M B |
 | 1B | AGAGCTTCCTGGAGGAGGAG | AGCCAAGCATCCACCTAGAA | 258 | 68–60 TD, 1M B |
 | 2A | TCTCCAGTTTGAAGCCTTTCAT | CTCAGCAGGAGTAAGGTTGC | 300 | 68–60 TD, 1M B |
 | 2B | CCACAATCTATGCCCTCTGC | TCAATCTTTCCTTGGCCACT | 296 | 68–60 TD, 1M B |
 | 2C | TCTTGGGATCTGTGATGCAG | TTCGAGGTCTTGAATGTGTCC | 286 | 68–60 TD, 1M B |