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Table 2 Top 30 probe sets identified by RMA/RF that are required for accurate classification.

From: Translating microarray data for diagnostic testing in childhood leukaemia

Subgroup Probe ID Gene Rank RMA/RF Rank Ross et al Expression above/below mean Fold change
BCR-ABL 201906_s_at CTDSPL 1 17 Above 2.5
  209365_s_at* ECM1 2 3 Above 5.0
  210830_s_at* PON2 3 2 Above 5.7
  202123_s_at ABL1 4 76 Above 2.0
  222154_s_at DNAPTP6 5 13 Above 6.9
E2A-PBX1 212148_at* PBX1 1 4 Above 29.6
  221113_s_at WNT16 2 18 Above 6.2
  205253_at* PBX1 3 3 Above 36.1
  230306_at MGC10485 4 11 Above 5.9
  225483_at MGC10485 5 8 Above 8.2
Hyperdipl.>50 200659_s_at PHB 1 - Above 2.8
  216071_x_at* TNRC11 2 1 Above 1.7
  208598_s_at UREB1 3 12 Above 1.6
  226875_at DOCK11 4 35 Above 2.3
  200057_s_at NONO 5 - Above 1.5
MLL 226939_at* CPEB2 1 1 Above 5
  219463_at* C20orf103 2 2 Above 15.2
  204069_at* MEIS1 3 3 Above 10
  218847_at IMP-2 4 24 Above 7
  201152_s_at MBNL1 5 23 Above 2.2
T-ALL 213539_at CD3D 1 17 Above 28.3
  227646_at EBF 2 23 Below 24.6
  217147_s_at TRIM 3 20 Above 10.1
  229487_at EBF 4 24 Below 20.4
  50221_at TFEB 5 - Below 2.2
TEL-AML1 206231_at KCNN1 1 15 Above 3.2
  241505_at* EST 2 4 Above 5.8
  206033_s_at DSC3 3 12 Above 8.8
  214110_s_at EST 4 - Above 2.2
  206032_at DSC3 5 11 Above 4.8
  1. † The ranking refers to the top 100 subgroup-discriminating probe sets identified by Ross et al. using the parallel analysis format.
  2. * Probe sets/genes identified as the top 5 subgroup-discriminators in both analyses, RMA/RF and Ross et al. (parallel format).
  3. • Probe sets that are represented on the HG-U133B array.