Skip to main content

Table 1 Summary of primer sequences and positions

From: SSeCKS/Gravin/AKAP12 attenuates expression of proliferative and angiogenic genes during suppression of v-Src-induced oncogenesis

Target gene

Sequence of forward and reverse primers

position

Mouse

  

Pdgfr-β

5'-AGCTACATGGCCCCTTATGA-3'

2749–2768

 

5'-GGATCCCAAAAGACCAGACA-3'

3069–3115

Tgfβ-1

5'-CGGGGCGACCTGGGCA CCATCCATGAC-3'

1597–1623

 

5'-CTGCTCCACCTTGGGCTTGCGACCCAC-3'

1975–2001

Cdc20

5'-GCTGGTTCTGGTGACATCCT-3'

757–776

 

5'-TGTTCCAACTGAGGGAGCTT-3'

939–958

Ptpn11

5'-AGTCCAAAGTGACCCACGTC-3'

623–643

 

5'-AGCGTCTCAAACTCTTCCCA-3'

874–893

Id2

5'-GGACATCAGCATCCTGTCCT-3'

383–402

 

5'-AACGGTATCACAGTCCAGGC-3'

659–678

Il1rl1

5'-CGCTCGACTTATCCTGTGGA-3'

299–318

 

5'-AGCTTGGCGGCTTTTTATGT-3'

490–509

Cdkn2d

5'AGCTTGGCGGCTTTTTATGT-3'

212–229

 

5'-CGGTCCCATTACTTGTCAC-3'

460–442

β- actin

5'-TTCTTTGCAGCTCCTTCGTTGCCG-3'

33–56

 

5'-TGGATGGCTACGTACATGGCTGGG-3'

467–490

Gpr56

Qiagen QuantiTect Assay, cat. #QT00178689

 

Maff

Qiagen QuantiTect Assay, cat. #QT00133224

 

Ngfb

Qiagen QuantiTect Assay, cat. #QT00093464

 

Socs3

Qiagen QuantiTect Assay, cat. #QT00100331

 

Gadd45a

Qiagen QuantiTect Assay, cat. #QT00249655

 

Marcks

Qiagen QuantiTect Assay, cat. #QT00252973

 

Hif1a

Qiagen QuantiTect Assay, cat. #QT00182532

 

Afp

Qiagen QuantiTect Assay, cat. #QT00174020

 

Human

  

CDC20A

5'-GGGTTCCTCTGCAGACATTC-3'

1034–1053

 

5'-TGTAATGGGGAGACCAGAGG-3'

1215–1234

PSCDBP

5'-TCAATGCAGCAATTGGAGTC-3'

741–761

 

5'-ATGTCAATGCACGTCAGCAT-3'

920–940

FOSL1

5'-CCAAGCATCAACACCATGAG-3'

302–321

 

5'-GGGCTGATCTGTTCACAAGG-3'

473–492

HMGA2

5'-CGAAAGGTGCTGGGCAGCTCCGG-3'

786–808

 

5'-CCATTTCCTAGGTCTGCCTCTTG-3'

1086–1110

HMGB3

5'-ACAACCGAGACAAACCCTTG-3'

1107–1126

 

5'-CCCCTTTGTCCACAGCTAAG-3'

1290–1310

β- ACTIN

5'-GCTCGTCGTCGACAACGGCTC-3'

93–113

 

5'-CAAACATGATCTGGGTCATCTTCTC-3'

445–421

AFP

Qiagen QuantiTect Assay, cat. #QT00085183

 

PDGFRB

Qiagen QuantiTect Assay, cat. #QT00082327

 

HIF1A

Qiagen QuantiTect Assay, cat. #QT00083644

Â