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Table 1 Differential gene expression in the tumor v donor, tumor v adjacent normal and adjacent normal v donor comparisons. The number of genes identified as differentially regulated at each delta (observed d value – expected d value; for details, see Materials and Methods) are shown. Also, shown are the number of up and down regulated genes at each delta. For each of these deltas, the false discovery rate was no greater than 2.5%.

From: Differences in gene expression in prostate cancer, normal appearing prostate tissue adjacent to cancer and prostate tissue from cancer free organ donors

 

Delta 3.0

Delta 2.0

Delta 1.56

Tumor v Donor

65

474

928

Up Regulated

10

121

305

Down Regulated

55

353

623

Tumor v Adjacent Normal

0

92

382

Up Regulated

 

0

58

Down Regulated

 

92

324

Adjacent Normal v Donor

12

86

254

Up Regulated

5

25

63

Down Regulated

7

61

191