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Table 1 The distribution of FANCA promoter polymorphism genotypes in breast and ovarian cancer cases and controls

From: A novel duplication polymorphism in the FANCApromoter and its association with breast and ovarian cancer

Study Group

No.

11

12

22

12 + 22

  

n (%)

n (%)

n (%)

n (%)

p valuea

ORb (95% CI)

Control

256

112 (43.8)

115 (44.9)

29 (11.3)

144 (56.2)

  

All Breast Cancer

352

164 (46.6)

150 (42.6)

38 (10.8)

188 (53.4)

0.51

0.89 (0.64–1.23)

   Diagnosis ≤ 40 years

203

104 (51.2)

79 (38.9)

20 (9.9)

99 (48.8)

0.13

0.74 (0.51–1.07

   Family History

105

39 (37.1)

53 (50.5)

13 (12.4)

66 (62.9)

0.29

1.32 (0.83–2.10)

   Bilateral Disease

44

21 (47.7)

18 (40.9)

5 (11.4)

23 (52.3)

0.63

0.85 (0.45–1.62)

All Ovarian Tumours

390

202 (51.8)

153 (39.2)

35 (9.0)

188 (48.2)

0.05

0.72 (0.53–0.99)

   All Malignant

313

157 (50.2)

126 (40.2)

30 (9.6)

156 (49.8)

0.13

0.77 (0.55–1.08)

Serous

127

62 (48.8)

52 (40.9)

13 (10.2)

65 (51.1)

0.38

0.81 (0.53–1.25)

Endometrioid

82

44 (53.6)

29 (35.4)

9 (11.0)

38 (46.4)

0.13

0.67 (0.41–1.11)

Mucinous

42

23 (54.8)

16 (38.1)

3 (7.1)

19 (45.2)

0.24

0.64 (0.33–1.24)

Clear Cell

13

4 (30.8)

8 (61.5)

1 (7.7)

9 (69.2)

0.40

1.75 (0.52–5.83)

Adenocarcinoma

49

24 (49.0)

21 (42.8)

4 (8.2)

25 (51.0)

0.53

0.81 (0.44–1.49)

   Borderline

15

6 (40.0)

8 (53.3)

1 (6.7)

9 (60.0)

1.00

1.16 (0.40–3.37)

   Benign

62

39 (62.9)

19 (30.6)

4 (6.4)

23 (37.0)

0.007

0.46 (0.26–0.81)

  1. Allele 1 corresponds to the single copy allele, allele 2 corresponds to the duplication allele.
  2. aFisher's exact test (two-sided) for the combined 12/22 genotype frequency using the 11 homozygotes as reference.
  3. bThe odds ratio (OR) and 95% confidence intervals (CI) are shown in parentheses.