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Table 3 Virtually-multiplexed transcript abundance data.

From: CEBPG transcription factor correlates with antioxidant and DNA repair genes in normal bronchial epithelial cells but not in individuals with bronchogenic carcinoma

SUBJECT #

GROUP

CEBPB

CEBPG

E2F1

E2F3

E2F6

EVI1

CAT

ERCC1

ERCC2

ERCC4

ERCC5

63

NBCI

7.2E+03

6.4E+02

2.7E+02

1.9E+02

3.4E+02

6.1E+01

2.0E+04

1.1E+05

3.8E+03

1.1E+02

4.3E+04

64

NBCI

7.9E+03

1.7E+03

2.0E+03

2.0E+01

1.7E+02

2.5E+01

2.5E+04

3.0E+05

3.4E+03

8.1E+01

2.0E+05

136

NBCI

6.2E+03

2.1E+02

7.0E+02

1.0E-02

5.0E+01

6.0E+01

2.9E+03

7.4E+03

5.9E+02

5.6E+01

1.9E+04

139

NBCI

4.5E+03

3.4E+03

2.3E+04

5.6E+02

1.0E+03

1.0E+03

6.1E+05

1.2E+06

2.2E+04

3.9E+03

4.6E+05

150

NBCI

8.5E+03

7.4E+02

1.6E+02

1.1E+02

4.1E+01

3.2E+02

3.5E+04

1.7E+05

5.7E+03

6.9E+02

7.2E+04

156

NBCI

2.1E+04

1.2E+03

7.5E+02

ND1

ND

1.4E+02

1.5E+04

1.8E+05

2.0E+03

2.9E+02

3.0E+04

157

NBCI

2.3E+04

4.1E+03

3.1E+03

2.1E+02

6.1E+02

1.4E+02

3.5E+05

5.6E+05

8.4E+03

1.6E+03

2.1E+05

194

NBCI

6.5E+03

2.1E+03

2.9E+02

2.6E+02

8.5E+02

4.7E+02

4.5E+04

6.1E+05

4.7E+03

4.4E+02

8.9E+04

210

NBCI

1.0E+04

2.1E+03

7.6E+02

4.0E+02

6.1E+02

3.6E+02

7.6E+04

7.6E+04

3.4E+03

7.7E+02

7.2E+04

257

NBCI

1.1E+04

1.8E+03

2.7E+02

8.9E+02

1.7E+03

9.7E+02

1.0E+05

2.6E+05

1.6E+03

7.6E+02

7.4E+04

261

NBCI

7.6E+03

1.3E+03

2.5E+02

1.7E+02

1.6E+02

9.4E+01

4.4E+04

2.7E+05

5.1E+03

4.6E+02

1.3E+05

282

NBCI

6.4E+03

1.2E+03

5.4E+02

4.1E+01

2.9E+01

1.2E+02

4.1E+04

1.0E+05

6.0E+03

8.1E+02

4.0E+04

285

NBCI

2.6E+03

4.4E+02

2.5E+03

1.1E+03

ND

1.2E+02

3.7E+04

9.1E+04

1.6E+03

7.7E+03

1.6E+04

296

NBCI

1.9E+04

1.0E+03

1.0E+03

ND

2.8E+01

ND

6.9E+04

2.5E+05

3.6E+03

1.7E+02

7.1E+04

305

NBCI

1.8E+03

9.1E+01

6.1E+02

ND

8.7E+01

2.6E+02

2.0E+04

4.9E+04

4.3E+02

2.8E+02

1.3E+04

315

NBCI

3.5E+03

1.3E+03

1.2E+03

2.0E+02

7.5E+01

6.1E+02

4.7E+04

2.1E+05

2.7E+03

2.4E+03

6.2E+04

330

NBCI

2.7E+03

2.4E+02

4.0E+02

1.1E+02

3.5E+02

4.0E+02

3.6E+04

8.3E+04

1.5E+03

1.7E+03

2.8E+04

331

NBCI

7.3E+03

1.3E+03

8.0E+02

ND

ND

ND

8.6E+04

2.6E+05

6.5E+02

6.4E+02

6.2E+04

334

NBCI

3.7E+03

6.1E+02

1.1E+03

2.3E+01

1.9E+01

4.0E+01

7.8E+04

1.4E+05

2.5E+03

1.3E+03

5.1E+04

336

NBCI

3.6E+03

8.4E+02

2.8E+03

4.3E+02

1.2E+02

2.5E+02

8.9E+04

2.1E+05

7.9E+03

3.1E+03

9.5E+04

337

NBCI

5.0E+03

9.3E+02

1.1E+03

1.6E+02

2.5E+02

ND

6.5E+04

1.9E+05

3.3E+03

1.3E+03

4.2E+04

339

NBCI

2.5E+03

3.2E+02

5.2E+02

3.4E+01

4.3E+01

6.3E+01

5.0E+04

8.7E+04

2.3E+03

7.7E+02

3.2E+04

361

NBCI

7.9E+03

2.5E+03

6.7E+02

5.8E+02

1.4E+03

3.5E+02

6.7E+04

2.5E+05

1.5E+03

2.8E+03

4.7E+04

363

NBCI

6.2E+03

1.7E+03

1.4E+03

1.1E+02

1.9E+02

5.2E+01

7.6E+04

1.4E+05

3.7E+03

7.3E+02

7.2E+04

34

BCI

1.9E+03

1.7E+03

5.7E+02

2.4E+02

1.2E+02

3.7E+02

6.7E+04

5.6E+05

6.1E+03

1.5E+03

1.2E+05

71

BCI

7.6E+03

1.2E+03

1.3E+03

1.7E+01

1.8E+02

2.1E+01

9.5E+04

6.7E+05

1.8E+04

2.4E+02

2.2E+05

85

BCI

1.0E+04

9.7E+02

8.7E+02

6.3E+01

ND

ND

2.6E+04

4.9E+04

1.1E+03

3.9E+02

2.3E+04

88

BCI

1.5E+03

4.0E+02

4.2E+02

1.1E+02

ND

ND

3.1E+04

2.9E+04

2.7E+03

3.6E+02

3.9E+04

99

BCI

1.4E+04

3.3E+03

2.6E+03

2.2E+02

3.1E+03

1.4E+02

2.1E+05

2.0E+05

3.7E+03

9.3E+02

1.4E+05

118

BCI

1.5E+03

1.2E+03

2.8E+02

ND

ND

1.4E+02

2.4E+04

3.5E+04

1.9E+03

1.2E+03

1.7E+04

146

BCI

1.9E+04

1.2E+03

2.3E+02

1.2E+02

1.6E+03

6.0E+01

3.1E+04

1.4E+05

4.9E+03

2.7E+02

6.2E+04

147

BCI

2.8E+03

1.3E+03

N/A2

3.6E+02

2.8E+02

3.8E+02

6.1E+04

3.0E+05

2.7E+03

1.1E+03

1.8E+04

158

BCI

4.9E+03

8.8E+02

1.9E+02

2.8E+01

4.0E+02

6.8E+01

2.2E+04

1.4E+05

1.7E+03

1.5E+02

1.3E+04

167

BCI

6.7E+03

9.2E+02

4.2E+02

1.8E+02

8.2E+02

3.8E+02

8.9E+04

1.1E+05

2.2E+03

2.8E+02

4.1E+04

171

BCI

1.0E+04

3.9E+03

3.2E+03

5.1E+02

8.9E+01

2.4E+02

5.3E+05

8.3E+05

1.3E+04

6.3E+02

1.6E+05

191

BCI

1.6E+04

2.4E+03

1.5E+02

1.5E+02

7.1E+01

1.2E+02

2.0E+04

9.6E+04

2.5E+03

3.4E+02

1.2E+04

211

BCI

3.8E+03

1.1E+03

6.5E+02

6.3E+02

3.2E+02

2.9E+02

8.3E+04

3.5E+05

2.8E+03

3.2E+02

9.1E+04

212

BCI

1.8E+04

2.8E+03

6.0E+02

3.4E+02

2.0E+02

2.2E+02

3.4E+04

2.1E+05

5.2E+03

3.0E+02

3.6E+04

247

BCI

6.5E+03

7.5E+02

6.4E+02

1.8E+02

ND

1.2E+02

7.8E+04

4.4E+04

5.5E+02

2.7E+03

1.3E+04

255

BCI

1.9E+04

1.1E+03

6.1E+02

1.8E+01

2.3E+02

7.6E+01

1.1E+05

6.5E+05

1.2E+04

1.2E+03

3.8E+05

259

BCI

8.4E+03

6.4E+02

5.1E+02

ND

6.7E+01

4.0E+01

4.7E+04

1.5E+05

2.6E+03

3.8E+02

7.9E+04

271

BCI

4.1E+03

6.6E+02

1.4E+03

6.5E+01

2.7E+02

1.9E+02

9.1E+04

1.5E+05

1.6E+03

ND

1.5E+05

287

BCI

8.7E+03

1.1E+03

9.5E+01

7.4E+01

4.0E+01

2.6E+02

4.7E+04

1.2E+05

6.5E+03

1.1E+02

4.1E+04

300

BCI

4.9E+03

4.4E+02

4.1E+02

4.4E+01

ND

5.1E+01

3.4E+04

6.9E+04

1.0E+03

1.0E+03

2.6E+04

306

BCI

6.5E+03

6.8E+02

4.9E+02

4.4E+01

ND

1.7E+01

3.7E+04

2.5E+05

2.8E+03

3.2E+02

4.1E+04

314

BCI

4.4E+03

9.3E+02

4.8E+02

3.1E+02

ND

1.9E+02

5.3E+04

6.2E+04

4.5E+03

5.2E+02

3.1E+04

329

BCI

1.4E+04

3.5E+02

2.4E+02

ND

ND

ND

7.9E+04

1.5E+05

1.4E+03

ND

1.5E+05

335

BCI

4.2E+03

3.7E+02

2.2E+03

3.3E+02

2.4E+02

2.4E+02

4.8E+04

1.9E+05

9.8E+03

3.1E+02

3.3E+04

B3

BCI

7.4E+03

9.3E+02

1.4E+02

2.4E+02

1.8E+02

3.8E+02

3.4E+04

1.6E+05

2.2E+03

2.8E+02

4.1E+04

SUBJECT #

GROUP

GPX1

GPX3

GSTM15

GSTM3

GSTP1

GSTT1

GSTZ1

MGST1

SOD1

XPA

XRCC1

63

NBCI

8.4E+05

1.5E+03

7.3E+03

3.9E+03

1.9E+06

ND

3.1E+03

1.7E+05

1.6E+05

2.5E+03

2.1E+04

64

NBCI

4.4E+05

3.1E+02

1.5E+04

2.6E+03

3.5E+06

6.4E+03

2.0E+03

1.6E+05

6.5E+05

2.2E+03

4.2E+04

136

NBCI

2.0E+05

5.2E+02

6.3E+03

2.2E+03

5.3E+05

ND

8.9E+02

3.2E+04

5.3E+04

1.1E+03

4.4E+03

139

NBCI

1.8E+06

3.2E+03

5.2E+04

8.3E+03

3.2E+07

ND

2.8E+04

8.4E+05

2.2E+06

2.6E+04

1.6E+05

150

NBCI

2.1E+05

2.8E+03

1.1E+04

1.1E+03

1.5E+06

ND

3.1E+03

3.1E+04

2.0E+05

2.0E+03

3.1E+04

156

NBCI

4.8E+05

3.9E+03

1.9E+04

6.5E+03

2.9E+06

ND

4.9E+03

5.8E+04

1.3E+05

4.0E+03

2.5E+04

157

NBCI

2.4E+06

2.0E+03

2.6E+04

3.3E+03

1.8E+07

8.5E+03

3.6E+03

3.6E+05

1.8E+06

6.2E+03

1.7E+05

194

NBCI

5.4E+05

4.0E+03

1.2E+04

1.1E+03

7.8E+06

7.7E+03

3.2E+03

9.6E+04

5.8E+05

3.7E+03

2.4E+05

210

NBCI

3.2E+05

3.3E+03

4.1E+03

2.6E+03

3.9E+06

1.8E+03

3.7E+03

7.2E+04

3.3E+05

4.8E+03

2.9E+04

257

NBCI

6.3E+05

2.5E+03

1.1E+04

1.2E+02

2.8E+06

8.7E+03

2.9E+03

2.3E+04

1.2E+05

2.6E+03

4.9E+04

261

NBCI

7.6E+05

4.7E+03

1.6E+04

7.4E+03

3.1E+06

1.5E+03

1.8E+03

1.2E+05

4.5E+05

4.9E+03

7.2E+04

282

NBCI

4.6E+05

2.5E+03

1.3E+04

2.3E+03

1.9E+06

1.5E+04

1.3E+03

6.5E+04

4.5E+05

2.0E+03

3.1E+04

285

NBCI

4.3E+05

5.3E+03

8.4E+04

6.2E+02

3.5E+06

7.3E+03

9.2E+03

3.0E+04

2.3E+05

ND

2.0E+04

296

NBCI

8.1E+05

1.5E+03

7.4E+03

4.1E+03

3.6E+06

8.1E+03

4.5E+03

2.0E+05

5.4E+05

2.6E+03

5.2E+04

305

NBCI

1.4E+05

6.5E+02

4.0E+03

3.2E+03

1.6E+06

ND

6.9E+02

4.1E+04

1.8E+05

1.3E+03

5.7E+03

315

NBCI

4.2E+05

7.6E+03

5.1E+03

3.1E+03

7.9E+06

7.2E+03

4.3E+03

7.3E+04

4.5E+05

1.0E+04

3.8E+04

330

NBCI

1.2E+05

2.0E+03

5.8E+03

3.5E+03

1.1E+06

3.1E+01

1.3E+03

2.9E+04

2.3E+05

1.4E+03

1.7E+04

331

NBCI

6.1E+05

3.4E+03

1.3E+04

3.6E+03

7.3E+06

1.0E+04

1.8E+03

1.2E+05

1.3E+06

1.9E+03

5.7E+04

334

NBCI

6.5E+05

4.0E+03

2.7E+04

1.7E+04

3.7E+06

4.6E+03

3.0E+03

6.8E+04

5.9E+05

2.9E+03

2.6E+04

336

NBCI

4.7E+05

2.7E+03

4.4E+04

1.6E+03

3.4E+06

1.2E+04

8.3E+03

6.2E+04

5.4E+05

4.2E+03

1.2E+05

337

NBCI

2.8E+05

2.8E+03

3.8E+03

4.3E+03

1.5E+06

5.3E+03

5.6E+03

4.9E+04

3.3E+05

1.7E+03

4.4E+04

339

NBCI

3.1E+05

1.6E+04

3.0E+04

1.1E+03

3.5E+06

6.6E+03

2.0E+03

6.6E+04

2.4E+05

2.5E+03

2.2E+04

361

NBCI

3.7E+05

8.4E+02

1.5E+04

1.3E+03

7.8E+06

3.1E+03

2.7E+03

4.8E+04

6.4E+05

6.1E+03

7.7E+04

363

NBCI

6.1E+05

2.7E+03

2.2E+04

2.0E+03

8.1E+06

9.9E+03

2.4E+03

9.7E+04

7.0E+05

7.0E+03

3.6E+04

34

BCI

8.8E+05

3.1E+03

3.4E+03

5.1E+02

1.8E+06

ND

1.9E+03

6.1E+04

2.9E+05

3.1E+03

5.6E+04

71

BCI

8.8E+05

1.3E+04

3.2E+04

2.2E+03

6.7E+06

ND

2.5E+03

4.1E+05

7.5E+05

3.1E+03

5.6E+05

85

BCI

2.3E+05

1.1E+03

2.6E+04

4.1E+03

1.2E+06

1.0E+04

8.1E+02

4.8E+04

1.5E+05

3.5E+03

1.8E+04

88

BCI

1.3E+05

1.5E+03

3.5E+03

1.1E+03

6.9E+05

ND

5.6E+02

2.4E+04

1.9E+05

2.4E+03

1.6E+04

99

BCI

9.0E+05

2.1E+03

1.5E+04

5.5E+03

9.6E+06

6.7E+03

8.0E+03

1.2E+05

9.4E+05

8.5E+03

4.7E+04

118

BCI

8.0E+04

3.8E+03

1.1E+04

4.8E+03

1.7E+06

4.0E+03

4.5E+02

4.4E+04

1.7E+05

1.1E+03

6.1E+03

146

BCI

4.1E+05

2.9E+04

4.7E+04

4.7E+02

2.0E+06

7.1E+03

1.6E+04

6.6E+04

1.7E+05

3.8E+04

6.5E+04

147

BCI

4.1E+05

2.5E+03

8.2E+03

7.3E+02

8.8E+05

1.7E+03

1.3E+03

2.3E+04

6.5E+05

2.3E+02

7.4E+04

158

BCI

2.6E+04

2.6E+03

1.4E+04

4.7E+03

2.3E+06

2.9E+03

1.2E+03

2.3E+04

3.7E+04

1.9E+03

2.3E+04

167

BCI

1.9E+05

2.5E+03

5.3E+03

1.8E+03

2.4E+06

1.4E+04

2.3E+03

9.5E+04

4.0E+05

2.9E+03

2.8E+04

171

BCI

1.6E+06

1.7E+03

1.6E+04

4.0E+03

7.8E+06

6.0E+03

6.5E+03

2.5E+05

1.4E+06

1.4E+04

6.0E+04

191

BCI

4.5E+05

1.9E+03

3.5E+03

2.5E+02

1.7E+06

3.6E+03

5.6E+02

2.1E+04

1.6E+05

2.5E+03

2.1E+04

211

BCI

6.0E+05

1.7E+04

1.1E+04

1.3E+02

1.0E+07

5.5E+03

4.1E+03

2.4E+04

7.1E+05

4.3E+03

8.3E+04

212

BCI

6.5E+04

1.6E+03

9.6E+03

1.1E+03

4.0E+06

8.1E+03

9.5E+02

7.5E+04

9.4E+04

3.1E+03

3.6E+04

247

BCI

2.3E+05

2.0E+02

1.4E+04

2.1E+03

1.3E+06

7.1E+03

1.1E+03

2.4E+04

1.3E+05

1.3E+03

1.1E+04

255

BCI

1.3E+06

7.3E+03

1.5E+04

2.5E+03

2.8E+06

3.8E+04

8.1E+03

1.1E+05

2.8E+06

2.0E+03

1.0E+05

259

BCI

3.0E+06

5.9E+03

1.4E+04

7.0E+03

9.2E+06

5.1E+03

5.1E+03

1.1E+05

5.0E+05

4.8E+03

2.1E+04

271

BCI

7.4E+05

9.5E+02

3.8E+03

2.6E+03

2.4E+06

3.7E+03

3.1E+03

7.1E+04

6.3E+05

4.1E+03

3.0E+04

287

BCI

5.8E+05

8.7E+03

1.1E+04

2.3E+03

1.9E+06

1.5E+04

6.3E+02

8.8E+04

1.2E+05

4.7E+03

3.3E+04

300

BCI

2.7E+05

1.5E+03

7.7E+03

5.0E+03

3.7E+06

7.1E+03

1.9E+03

6.7E+04

3.2E+05

8.0E+02

1.3E+04

306

BCI

4.2E+05

2.0E+02

9.7E+03

2.3E+03

2.2E+06

ND

4.8E+03

5.6E+04

1.1E+06

4.5E+02

1.9E+04

314

BCI

1.6E+05

3.7E+03

1.7E+04

1.1E+03

1.2E+06

1.9E+02

1.5E+03

2.7E+04

2.7E+05

2.8E+03

3.4E+04

329

BCI

2.3E+05

8.9E+03

1.6E+04

5.3E+03

7.2E+06

7.8E+03

1.4E+03

5.7E+04

8.9E+05

1.9E+03

4.8E+04

335

BCI

4.1E+05

6.5E+03

2.1E+04

7.1E+03

4.3E+06

1.8E+02

7.0E+03

6.9E+04

5.2E+05

3.9E+03

4.4E+04

B3

BCI

4.0E+05

3.2E+03

6.0E+03

3.8E+02

1.6E+06

7.7E+03

1.8E+03

1.8E+04

2.6E+05

3.7E+03

1.7E+04

  1. Virtually-multiplexed transcript abundance data for each gene (in the form of molecules/106 β-actin molecules) from all experiments were included in the same Standardized Expression Database (SED). These data are now directly comparable to previously published virtually-multiplexed transcript abundance data from this laboratory [15], or to Virtually-multiplexed transcript abundance data collected by others who use the NCI-funded (R24 CA 95806) Standardized Expression Measurement (SEM) Center. The data presented here represent more than 6,000 Virtually-multiplexed transcript abundance measurements conducted in multiple experiments. The sixteen antioxidant or DNA repair genes and each of the six transcription factors except for E2F1 were measured in each NBEC sample from 49 individuals (24 non-BC individuals and 25 BC individuals).
  2. 1ND, Not detectable (When 60 molecules of Competitive Template (CT) were added to the reaction, CT was detected but native template was not.)
  3. 2NA, Not available. E2F1 was measured in all of the samples except for one BC individual (24 non-BC individuals and 24 BC individuals).
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BMC Cancer

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