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Table 5 Comparison of expression: xenograft tumors and cultured cells

From: Antimetastatic gene expression profiles mediated by retinoic acid receptor beta 2 in MDA-MB-435 breast cancer cells

Gene symbol (Rank) Array fold change Cell fold change †Tissue fold change
ARGAP4 (44) 1.4 2.2 1.1
CA14 (86) -1.3 -1.9 -1.2
CTAG1 (3) 2.2 1.6 2.2
CTAG2 (93) 1.3 1.6 1.2
IFI27 (81) -1.3 -1.9 -1.4
‡IFIT1 (47) 1.4 1.3 -1.2
‡IFITM1 (28) 1.5 2.9 -1.5
JUN (90) -l.3 -1.5 -1.2
NDRG1 (42) 1.4 4.5 2.9
RPL10 (22) 1.6 1.4 1.2
RIG-I (79) 1.3 1.7 1.1
RNF28 (37) -1.5 *-2.2/-1.7 -1.4
SSR4 (52) 1.4 1.2 1.6
ST18 (20) 1.6 2.7 1.8
USP18 (35) -1.5 -1.6 -1.3
  1. †Fold change for tissue was determined by dividing the normalized (to RPLP0) qRT-PCR value of two tumors that contained exogenous RARβ2 by the normalized value of two tumors that contained the empty vector.
  2. ‡Map Viewer or AceView indicate that there are overlapping mRNA isoforms with the 60 mer probe.
  3. *two qRT-PCRs (each in triplicate) of independent RNA samples
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