Table 5 Genes with high expression in xenograft samples
From: The influence of tumor size and environment on gene expression in commonly used human tumor lines
Function | Affymetrix Probe Set ID | Gene Symbol | LocusLink ID | Sequence Probe Set Derived From | Gene Title |
|---|---|---|---|---|---|
Extracellular Matrix/Cell Adhesion | |||||
| Â | 31574_i_at | Â | Â | M14087 | Beta-galactoside-binding lectin, mRNA sequence |
| Â | 31810_g_at | CNTN1 | 1272 | Z21488 | contactin 1 |
| Â | 32305_at | COL1A2 | 1278 | J03464 | collagen, type I, alpha 2 |
| Â | 32701_at | ARVCF | 421 | U51269 | armadillo repeat gene deletes in velocardiofacial syndrome |
| Â | 36298_at | PRPH | 5630 | L14565 | peripherin |
| Â | 38181_at | MMP11 | 4320 | X57766 | matrix metalloproteinase 11 (stromelysin 3) |
| Â | 38570_at | HLA-DOB | 3112 | X03066 | major histocompatibility complex, class II, DO beta |
| Â | 38614_s_at | OGT | 8473 | U77413 | O-linked N-acetylglucosamine (GlcNAc) transferase |
Cell surface receptor | |||||
| Â | 33950_g_at | CRHR2 | 1395 | AF011406 | corticotropin releasing hormone receptor 2 |
| Â | 35485_at | GRM4 | 2914 | X80818 | glutamate receptor, metabotropic 4 |
| Â | 35503_at | HTR1B | 3351 | M81590 | 5-hydroxytryptamine (serotonin) receptor 1B |
| Â | 36277_at | CD3E | 916 | M23323 | CD3E antigen, epsilon polypeptide (TiT3 complex) |
| Â | 41190_at | TNFRSF25 | 8718 | U83598 | tumor necrosis factor receptor superfamily, member 25 |
Tanscription/transcription factor | |||||
| Â | 34786_at | JMJD1 | 55818 | AB018285 | zinc finger protein |
| Â | 36944_f_at | PLAGL1 | 5325 | U72621 | pleiomorphic adenoma gene-like 1 |
| Â | 37491_at | TAF1 | 6872 | D90359 | TAF1 RNA polymerase II, TATA box binding protein-associated factor |
| Â | 38216_at | TRIP8 | 9323 | L40411 | thyroid hormone receptor interactor 8 |
Intracellular transport | |||||
| Â | 32228_at | AP2A2 | 161 | AB020706 | adaptor-related protein complex 2, alpha 2 subunit |
| Â | 33779_at | VAMP1 | 6843 | AF060538 | vesicle-associated membrane protein 1 (synaptobrevin 1) |
Translation/RNA binding/RNA splicing | |||||
| Â | 1556_at | RBM5 | 10181 | U23946 | RNA binding motif protein 5 |
| Â | 31896_at | NAG | 51594 | AL050281 | neuroblastoma-amplified protein |
Unknown or other functions | |||||
| Â | 1155_at | Â | Â | J03069 | Â |
| Â | 1529_at | 13CDNA73 | 10129 | U50534 | hypothetical protein CG003 |
| Â | 31525_s_at | Â | Â | J00153 | Â |
| Â | 31652_at | KIAA1000 | 22989 | AB023217 | KIAA1000 protein |
| Â | 32355_at | DKFZP564D166 | 26115 | AL050270 | putative ankyrin-repeat containing protein |
| Â | 36811_at | Â | Â | U24389 | Â |
| Â | 37979_at | YAP1 | 10413 | X80507 | Yes-associated protein 1, 65 kDa |
| Â | 39499_s_at | PARD3 | 56288 | W25794 | par-3 partitioning defective 3 homolog |
| Â | 40928_at | WSB1 | 26118 | W26496 | SOCS box-containing WD protein SWiP-1 |
| Â | 41113_at | KIAA0557 | 26048 | AI871396 | KIAA0557 protein |
| Â | 41328_s_at | EML2 | 24139 | AL096717 | echinoderm microtubule associated protein like 2 |
| Â | 40856_at | SERPINF1 | 5176 | U29953 | serine (or cysteine) proteinase inhibitor, clade F, member 1 |
| Â | 32833_at | CLK1 | 1195 | M59287 | CDC-like kinase 1 |
| Â | 39451_i_at | IDS | 3423 | AF050145 | iduronate 2-sulfatase (Hunter syndrome) |
| Â | 36386_at | PDK1 | 5163 | L42450 | pyruvate dehydrogenase kinase, isoenzyme 1 |