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Table 5 Genes with high expression in xenograft samples

From: The influence of tumor size and environment on gene expression in commonly used human tumor lines

Function Affymetrix Probe Set ID Gene Symbol LocusLink ID Sequence Probe Set Derived From Gene Title
Extracellular Matrix/Cell Adhesion
  31574_i_at    M14087 Beta-galactoside-binding lectin, mRNA sequence
  31810_g_at CNTN1 1272 Z21488 contactin 1
  32305_at COL1A2 1278 J03464 collagen, type I, alpha 2
  32701_at ARVCF 421 U51269 armadillo repeat gene deletes in velocardiofacial syndrome
  36298_at PRPH 5630 L14565 peripherin
  38181_at MMP11 4320 X57766 matrix metalloproteinase 11 (stromelysin 3)
  38570_at HLA-DOB 3112 X03066 major histocompatibility complex, class II, DO beta
  38614_s_at OGT 8473 U77413 O-linked N-acetylglucosamine (GlcNAc) transferase
Cell surface receptor
  33950_g_at CRHR2 1395 AF011406 corticotropin releasing hormone receptor 2
  35485_at GRM4 2914 X80818 glutamate receptor, metabotropic 4
  35503_at HTR1B 3351 M81590 5-hydroxytryptamine (serotonin) receptor 1B
  36277_at CD3E 916 M23323 CD3E antigen, epsilon polypeptide (TiT3 complex)
  41190_at TNFRSF25 8718 U83598 tumor necrosis factor receptor superfamily, member 25
Tanscription/transcription factor
  34786_at JMJD1 55818 AB018285 zinc finger protein
  36944_f_at PLAGL1 5325 U72621 pleiomorphic adenoma gene-like 1
  37491_at TAF1 6872 D90359 TAF1 RNA polymerase II, TATA box binding protein-associated factor
  38216_at TRIP8 9323 L40411 thyroid hormone receptor interactor 8
Intracellular transport
  32228_at AP2A2 161 AB020706 adaptor-related protein complex 2, alpha 2 subunit
  33779_at VAMP1 6843 AF060538 vesicle-associated membrane protein 1 (synaptobrevin 1)
Translation/RNA binding/RNA splicing
  1556_at RBM5 10181 U23946 RNA binding motif protein 5
  31896_at NAG 51594 AL050281 neuroblastoma-amplified protein
Unknown or other functions
  1155_at    J03069  
  1529_at 13CDNA73 10129 U50534 hypothetical protein CG003
  31525_s_at    J00153  
  31652_at KIAA1000 22989 AB023217 KIAA1000 protein
  32355_at DKFZP564D166 26115 AL050270 putative ankyrin-repeat containing protein
  36811_at    U24389  
  37979_at YAP1 10413 X80507 Yes-associated protein 1, 65 kDa
  39499_s_at PARD3 56288 W25794 par-3 partitioning defective 3 homolog
  40928_at WSB1 26118 W26496 SOCS box-containing WD protein SWiP-1
  41113_at KIAA0557 26048 AI871396 KIAA0557 protein
  41328_s_at EML2 24139 AL096717 echinoderm microtubule associated protein like 2
  40856_at SERPINF1 5176 U29953 serine (or cysteine) proteinase inhibitor, clade F, member 1
  32833_at CLK1 1195 M59287 CDC-like kinase 1
  39451_i_at IDS 3423 AF050145 iduronate 2-sulfatase (Hunter syndrome)
  36386_at PDK1 5163 L42450 pyruvate dehydrogenase kinase, isoenzyme 1