From: Oxidative stress in susceptibility to breast cancer: study in Spanish population
Gene SNP name | Set | Genetic Model | OR(95%CI) | Genotype | Controls | Patients | p-value | AIC |
---|---|---|---|---|---|---|---|---|
GCLC rs3736729 | Set 1 | Recessive | 0.74 (0.54-1.01) | C/C | 147 (22.4%) | 79 (16.9%) | 0.058 | 1458.7 |
A/A-A/C | 508 (77.6%) | 387 (83.1%) | ||||||
 | Set 2 | Recessive | 0.89 (0.67-1.19) | C/C | 191 (23.9%) | 89 (21.8%) | 0.43 | 1549.3 |
A/A-A/C | 610 (76.2%) | 319 (78.2%) | ||||||
 | Set 1 + 2 | Recessive | 0.85 (0.73-1.00) | C/C | 343 (23.1%) | 177 (19.7%) | 0.054 | 3160.5 |
A/A-A/C | 1141 (76.9%) | 723 (80.3%) | ||||||
GPX6 rs406113 | Set 1 | Dominant | 1.26 (0.98-1.62) | A/C-C/C | 314 (51%) | 272 (57.6%) | 0.066 | 1408.9 |
A/A | 302 (49%) | 200 (42.4%) | ||||||
 | Set 2 | Dominant | 1.18 (0.93-1.50) | A/C-C/C | 435 (54.2%) | 241 (58.4%) | 0.17 | 1559.7 |
A/A | 367 (45.8%) | 172 (41.6%) | ||||||
 | Set 1 + 2 | Dominant | 1.23 (1.04- 1.46) | A/C-C/C | 759 (52.7%) | 524 (57.8%) | 0.015 | 3127.7 |
A/A | 681 (47.3%) | 382 (42.2%) | ||||||
GPX6 rs974334 | Set 1 | Recessive | 2.01 (1.07- 3.80) | G/G | 18 (2.8%) | 25 (5.4%) | 0.03 | 1452.9 |
C/C-C/G | 633 (97.2%) | 441 (94.6%) | ||||||
 | Set 2 | Recessive | 1.45 (0.70-3.01) | G/G | 17 (2.1%) | 13 (3%) | 0.33 | 1592.6 |
C/C-C/G | 785 (97.9%) | 415 (97%) | ||||||
 | Set 1 + 2 | Recessive | 1.73 (1.09 -2.73) | G/G | 37 (2.5%) | 39 (4.2%) | 0.02 | 3194.7 |
C/C-C/G | 1444 (97.5%) | 881 (95.8%) | ||||||
M6PR rs1805754 | Set 1 | Dominant | 1.31 (1.02 -1.68) | A/C-C/C | 257 (40%) | 215 (46.1%) | 0.034 | 1444.2 |
A/A | 386 (60%) | 251 (53.9%) | ||||||
 | Set 2 | Dominant | 1.05 (0.83-1.34) | A/C-C/C | 347 (44.1%) | 191 (45.4%) | 0.67 | 1565.8 |
A/A | 440 (55.9%) | 230 (54.6%) | ||||||
 | Set 1 + 2 | Dominant | 1.15 (0.98-1.36) | A/C-C/C | 619 (42.5%) | 420 (46%) | 0.093 | 3160.7 |
A/A | 838 (57.5%) | 493 (54%) | ||||||
OGG1 rs1052133 | Set 1 | Recessive | 1.76 (1.00-3.10) | G/G | 34 (5.1%) | 28 (8.1%) | 0.051 | 1124 |
C/C-C/G | 631 (94.9%) | 319 (91.9%) | ||||||
 | Set 2 | Recessive | 1.84 (1.11- 3.07) | G/G | 33 (4.1%) | 30 (7.3%) | 0.02 | 1543.7 |
C/C-C/G | 767 (95.9%) | 378 (92.7%) | ||||||
 | Set 1 + 2 | Recessive | 1.82 (1.31- 2.52) | G/G | 64 (4.5%) | 56 (7.9%) | 4e -04 | 2665.8 |
C/C-C/G | 1348 (95.5%) | 655 (92.1%) | ||||||
SOD3 rs2284659 | Set 1 | Recessive | 1.30 (0.92-1.84) | T/T | 83 (12.9%) | 80 (17.2%) | 0.14 | 1445.6 |
G/G-G/T | 560 (87.1%) | 386 (82.8%) | ||||||
 | Set 2 | Recessive | 1.25 (0.90-1.73) | T/T | 109 (13.6%) | 69 (16.4%) | 0.19 | 1577 |
G/G-G/T | 693 (86.4%) | 352 (83.6%) | ||||||
 | Set 1 + 2 | Recessive | 1.33 (1.05- 1.67) | T/T | 194 (13.2%) | 153 (16.8%) | 0.017 | 3172.3 |
G/G-G/T | 1278 (86.8%) | 760 (83.2%) | ||||||
TXN rs2301241 | Set 1 | Dominant | 0.80 (0.60-1.07) | C/T-C/C | 460 (74.4%) | 348 (71.2%) | 0.14 | 1350.5 |
T/T | 158 (25.6%) | 141 (28.8%) | ||||||
 | Set 2 | Dominant | 1.35 (1.03-1.78 | C/T-C/C | 569 (71.2%) | 318 (77%) | 0.03 | 1554.4 |
T/T | 230 (28.8%) | 95 (23%) | ||||||
 | Set 1 + 2 | Dominant | 1.05 (0.87-1.27) | C/T-C/C | 1014 (72.9%) | 660 (73.9%) | 0.59 | 3060.6 |
T/T | 377 (27.1%) | 233 (26.1%) | ||||||
TXN rs4135179 | Set 1 | Dominant | 1.27 (0.97-1.66) | A/G-G/G | 178 (28%) | 151 (32.8%) | 0.085 | 1431 |
A/A | 458 (72%) | 310 (67.2%) | ||||||
 | Set 2 | Dominant | 1.08 (0.83-1.39) | A/G-G/G | 248 (31%) | 136 (32.5%) | 0.57 | 1571.2 |
A/A | 553 (69%) | 282 (67.5%) | ||||||
 | Set 1 + 2 | Dominant | 1.14 (0.95-1.36) | A/G-G/G | 435 (29.7%) | 294 (32.5%) | 0.16 | 3153 |
A/A | 1029 (70.3%) | 611 (67.5%) | ||||||
TXN rs4135225 | Set 1 | Recessive | 0.66 (0.45-0.96) | C/C | 104 (16.2%) | 48 (10.5%) | 0.029 | 1431.1 |
T/T-C/T | 536 (83.8%) | 410 (89.5%) | ||||||
 | Set 2 | Recessive | 0.97 (0.68-1.38) | C/C | 104 (13%) | 53 (12.7%) | 0.87 | 1574.5 |
T/T-C/T | 698 (87%) | 366 (87.3%) | ||||||
 | Set 1 + 2 | Recessive | 0.77 (0.60- 0.99) | C/C | 212 (14.4%) | 104 (11.5%) | 0.041 | 3151.7 |
T/T-C/T | 1257 (85.6%) | 799 (88.5%) | ||||||
XDH rs207454 | Set 1 | Recessive | 4.98 (1.28- 19.34) | C/C | 3 (0.5%) | 9 (1.9%) | 0.012 | 1450.3 |
A/A-A/C | 646 (99.5%) | 457 (98.1%) | ||||||
 | Set 2 | Recessive | 1.61 (0.54-4.83) | C/C | 7 (0.9%) | 6 (1.4%) | 0.4 | 1589.1 |
A/A-A/C | 793 (99.1%) | 421 (98.6%) | ||||||
 | Set 1 + 2 | Recessive | 2.12 (1.11-4.04) | C/C | 11 (0.8%) | 15 (1.6%) | 0.024 | 3188.5 |
 |  |  |  | A/A-A/C | 1464 (99.2%) | 904 (98.4%) |  |  |