From: Detection of infectious organisms in archival prostate cancer tissues
Organism | Target | Primers and probes (5′ to 3′) | Product size | References | |
---|---|---|---|---|---|
C. trachomatis | CT cryptic plasmid | 206 bp | COBAS ® TaqMan ® CT test, v2.0, Roche | ||
U. urealyticum | ureB gene | UUureF | GATCACATTTCCACTTATTTGAAACA | 100 bp | Mallard et al. [18] |
UUureR | AAACGACGTCCATAAGCAACTTTA | ||||
UUure2MGB | AAACGAAGACAAAGAAC | ||||
U. parvum | ureB gene | UPureF | GATCACATTTTCACTTGTTTG AAGTG | 99 bp | Mallard et al. [18] |
UPureR | AACGTCGTCCATAAGCAACTTTG | ||||
UPure1MGB | AGGAAATGAAGATAAAGAAC | ||||
M. gentalium | MgPa adhesin gene | MgPa-355 F | GAGAAATACCTTGATGGTCAGCAA | 78 bp | Jensen et al. [19] |
MgPa-432R | GTTAATATCATATAAAGCTCTACCGTTGTTATC | ||||
MgPa-380 | FAM-ACTTTGCAATCAGAAGGT-MGB | ||||
HPV | 140-150 bp | Genera Biosystems Ltd | |||
HSV-2 | Glycoprotein D gene | H5 | TGTGCTATCCCCATCACGGT | 239 bp | Powell et al. [24] |
H6 | GGCTCGGTGCTCCAGGATAA | ||||
HSVgs-1 | CCGCTGGAACTACTATGACAGCTTCAGC | ||||
HSVgs-2 | CCGTCAGCGAGGATAACCTGGG | ||||
XMRV | Integrase gene | XMRV4552F | CGAGAGGCAGCCATGAAGG | 122 bp | Schlaberg et al. [22] |
XMRV4653R | GAGATCTGTTTCGGTGTAATGGAAA | ||||
XMRV4673R | CCCAGTTCCCGTAGTCTTTTGAG | ||||
XMRV4572MGB | 6FAMAGTTCTAGAAACCTCTACACTCMGBNFQ | ||||
BK virus | TAg | BK-Hirsch-1 | AGCAGGCAAGGGTTCTATTACTAAAT | 128 bp | Hirsch et al. [23] |
BK-Hirsch-2 | GAAGCAACAGCAGATTCTCAACA | ||||
Probe | HEXAAGACCCTAAAGACTTTCCCTCTGATCTACACCAGTTTBHQ1 | ||||
T. vaginalis | A6p region | TVA5 | GATCATGTTCTATCTTTTCA | 102 bp | |
TVA6 | GATCACCACCTTAGTTTACA | ||||
TV-F1AS | TTACACTCTGAGTTCTTTCTTCTA | ||||
TV-F2AS | AGTCTTTTTTAGATTTTGAAACA | ||||
Human β-globin | β-globin gene | GH20 | GAAGAGCCAAGGACAGGTAC | 268 bp | Resnick et al. [16] |
PC04 | CAACTTCATCCACGTTCACC |