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Table 3 Overview of differentially expressed probes (DEPs) between the different sample groups

From: Molecular profiling of cutaneous squamous cell carcinomas and actinic keratoses from organ transplant recipients

  SCC vs. NS AK vs. NS SCC vs. AK ‘Progression’
# of samples 15 vs. 13 14 vs. 13 15 vs. 14  
# of DEPs with FDR < 0.01 6820* (3333/3487) 3734 (1554/2180) 2131 (1088/1043) 658 (262/396)
# of DEPs with FDR < 0.01 and log2FC > = 0.5 2087 (1087/1009) 977 (526/451) 571 (289/282) 180 (90/90)
# of DEP with FDR < 0.01 and log2FC > = 1.0 639 (370/269) 219 (167/52) 145 (81/64) 40 (32/8)
  1. * Total number of DEPs (number of upregulated DEPs/number of downregulated DEPs).