Table 1 List of predicted p53-REs mapped nearby miR genes
From: Identification of new p53 target microRNAs by bioinformatics and functional analysis
miR name | p53-RE Genomic location | p53-RE distance miRNA | Overlapping transcript | Distance from sense transcript TSS | p53- RE organization | ||
|---|---|---|---|---|---|---|---|
DIMER 1 | Spacer | DIMER 2 | |||||
Consensus | - | - | - | - | RRRCATGYYY | N = 0 - 13 | RRRCATGYYY |
miR-34a | Chr 1 - 9242203 | - 30,476 bp | Intergenic | + 123 bp | GGGCTTGCCT | - | GGGCTTGTTC |
miR-10b | Chr 2 - 177013750 | - 1,281 bp | HOXD3 | + 12,065 bp | TAACTCGTTG | GCTTTGACCTGTCT | GAACAAGTCG |
miR-23b | Chr 9 - 97818687 | - 28,803 bp | C9orf3 | + 135 bp | AGGTCAGTCA | TG | GGACATGTCC |
miR-106a | Chr X - 133309906 | - 5,678 bp | Intergenic | - | GTTATGTTC | ATGTGCTCAT | GTGCATGCCC |
miR-145 | Chr 5 - 148786372 | - 23,837 bp | Intergenic | + 68 bp | GCACCCGCCT | CGCCCCAATACG | GGGCTTGCCT |
miR-151a | Chr 8 - 141734774 | - 2,349 bp | PTK2 | - 75,874 bp | TGGCTTGTTT | - | TGGCAAGTTC |
miR-191 | Chr 3 - 49063594 | - 5,543 bp | DARLD3 | + 5,103 bp | GACCTTGTCT | TGCTTCC | AGCCATGTCA |
miR-198 | Chr 3 - 120112741 | + 1,774 bp | FSTL1 | - 57,359 bp | AGGCAAGCTT | - | CAACAAGCCG |
miR-202 | Chr 10 - 135058647 | + 2,368 bp | RP13-49115.5 | - 2,748 bp | GGGCATGTCT | - | TGGCAAGCCT |
miR-221 | Chr X - 45599946 | + 5,639 bp | Intergenic | - | GAACATGCAT | - | GCACATGTTT |
miR-455 | Chr 9 - 116880600 | - 91,114 bp | COL27A1 | - 49,395 bp | CTTCCTGCAT | AAGGCTTGGCGG | GCGCAAGCCC |
miR-320a | Chr 8 - 22095461 | + 7,014 bp | Intergenic | - | AGGCATGGTG | - | CGGCATGCCT |
miR-328 | Chr 16 - 67331546 | - 95,322 bp | ELMO3 | + 98,475 bp | CGGCAAGTCC | C | CAGCCAGTTC |
miR-671 | Chr 7 - 150896632 | - 38,875 bp | CHPF2 | - 32,953 bp | GGTCCAGCCC | TCTGGCCCCC | CAACAAGTCT |
miR-1204 | Chr 8 - 128808017 | - 191 bp | PVT1 | + 1,238 bp | CGACAAGTTG | - | AGACTTGTTC |
miR-1206 | Chr 8 - 129002467 | - 18,677 bp | PVT1 | + 1,037 bp | GGGCTAGTGA | - | AGGCATGTCT |