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Table 1 Patients and tumours characteristics

From: BRCA1 promoter hypermethylation, 53BP1 protein expression and PARP-1 activity as biomarkers of DNA repair deficit in breast cancer

  

PARP activity (Low < 7 U / mg Protein, High ≥ 7 U / mg Protein)

BRCA1methylation status

Patients’ characteristics

N (%)

Low n (%)

High n (%)

p

Mean ± SD

p

Methylated n (%)

Not Methylated n (%)

p

Age at diagnosis (years)

   

0.92

 

0.83

  

0.17

Median (range)

54 (29–75)

        

≤ 54

80 (51.6%)

38 (52.1%)

42 (51.2%)

 

11.7 (13)

 

12 (66.7%)

68 (49.6%)

 

> 54

75 (48.4%)

35 (47.9%)

40 (48.8%)

 

12.7 (20.5)

 

6 (33.3%)

69 (50.4%)

 

Menopausal status

   

0.87

 

0.54

  

0.62

Pre-menopausal

69 (44.5%)

33 (45.2%)

36 (43.9%)

 

12.5 (13.8)

 

9 (50.0%)

60 (43.8%)

 

Post-menopausal

86 (55.5%)

40 (54.8%)

46 (56.1%)

 

11.9 (19.3)

 

9 (50.0%)

77 (56.2%)

 

T classification

   

0.67

 

0.60

  

0.76

T1

76 (49%)

36 (49.3%)

40 (48.8%)

 

14 (21.1)

 

9 (50.0%)

67 (48.9%)

 

T2

75 (48.4%)

36 (49.3%)

39 (47.6%)

 

10.4 (12)

 

9 (50.0%)

66 (48.2%)

 

T3-4

4 (2.6%)

1 (1.4%)

3 (3.7%)

 

10 (3.7)

 

0

4 (2.9%)

 

N classification

   

0.75

 

0.8

  

0.71

N0

106 (68.4%)

49 (67.1%)

57 (69.5%)

 

12.4 (18.1)

 

13 (72.2%)

93 (67.9%)

 

N+

49 (31.6%)

24 (32.9%)

25 (30.5%)

 

11.8 (14.6)

 

5 (27.8%)

44 (32.1%)

 

Histology

   

0.27

 

0.3

  

0.53

Ductal

120 (77.4%)

53 (72.6%)

67 (81.7%)

 

13.1 (18.3)

 

15 (83.3%)

105 (76.6%)

 

Lobular

9 (5.8%)

4 (5.5%)

5 (6.1%)

 

7.8 (8.3)

 

0

9 (6.6%)

 

Other

26 (16.8%)

16 (21.9%)

10 (12.2%)

 

9.6 (12.5)

 

3 (16.7%)

23 (16.8%)

 

Grade

   

0.23

 

0.02

  

0.03

I / II

1 (0.6%) / 51 (32.9%)

28 (38.4%)

24 (29.3%)

 

9.2 (12.8)

 

2 (11.1%)

50 (36.5%)

 

III

103 (66.5%)

45 (61.6%)

58 (70.7%)

 

13.7 (18.7)

 

16 (88.9%)

87 (63.5%)

 

Mitotic count score

   

0.04

 

0.003

  

0.04

1

31 (20%)

20 (27.4%)

11 (13.4%)

 

8.3 (13.6)

 

1 (5.6%)

30 (21.9%)

 

2

62 (40%)

30 (41.1%)

32 (39.0%)

 

10.8 (16.2)

 

5 (27.8%)

57 (41.6%)

 

3

62 (40%)

23 (31.5%)

39 (47.6%)

 

15.6 (18.8)

 

12 (66.7%)

50 (36.5%)

 

ER

   

0.88

 

0.66

  

0.001

Positive

88 (56.8%)

41 (56.2%)

47 (57.3%)

 

12.1 (16.9)

 

4 (22.2%)

84 (61.3%)

 

Negative

67 (43.2%)

32 (43.8%)

35 (42.7%)

 

12.4 (17.3)

 

14 (77.8%)

53 (38.7%)

 

PR

   

0.94

 

0.75

  

0.01

Positive

59 (38.1%)

28 (38.4%)

31 (37.8%)

 

11.5 (14.3)

 

2 (11.1%)

57 (41.6%)

 

Negative

96 (61.9%)

45 (61.6%)

51 (62.2%)

 

12.6 (18.6)

 

16 (88.9%)

80 (58.4%)

 

HER2

   

0.62

 

0.5

  

0.01

Positive

50 (32.3%)

25 (34.2%)

25 (30.5%)

 

9.7 (11.3)

 

1 (5.6%)

49 (35.8%)

 

Negative

105 (67.7%)

48 (65.8%)

57 (69.5%)

 

13.4 (19.1)

 

17 (94.4%)

88 (64.2%)

 

Molecular profile grouping

   

0.81

 

0.68

  

<0.001

HER2+

50 (32.3%)

25 (34.2%)

25 (30.5%)

 

9.7 (11.3)

 

1 (5.6%)

49 (35.8%)

 

HR+/HER2-

57 (36.7%)

25 (34.2%)

32 (39.0%)

 

13.4 (19.9)

 

3 (16.7%)

54 (39.4%)

 

Triple negative

48 (31%)

23 (31.5%)

25 (30.5%)

 

13.4 (18.3)

 

14 (77.8%)

34 (24.8%)

 

uPA level ( ≥3)

   

0.37

 

0.3

  

0.01

High

97 (62.6%)

43 (58.9%)

54 (65.9%)

 

12.9 (17)

 

16 (88.9%)

81 (59.1%)

 

Low

58 (37.4%)

30 (41.1%)

28 (34.1%)

 

11 (17.2)

 

2 (11.1%)

56 (40.9%)

 

PAI-1 level ( ≥14)

   

0.32

 

0.42

  

0.03

High

112 (72.3%)

50 (68.5%)

62 (75.6%)

 

11.4 (12.4)

 

17 (94.4%)

95 (69.3%)

 

Low

43 (27.7%)

23 (31.5%)

20 (24.4%)

 

14.2 (25.5)

 

1 (5.6%)

42 (30.7%)

 

PARP Activity

        

0.82

≤ 2.6 U/mg Prot

39 (25.2%)

-

-

-

-

-

4 (22.2%)

35 (25.5%)

 

2.7 - 7

42 (27.1%)

-

-

-

-

-

6 (33.3%)

36 (26.3%)

 

7.1 - 14

37 (23.9%)

-

-

-

-

-

3 (16.7%)

34 (24.8%)

 

> 14

37 (23.9%)

-

-

-

-

-

5 (27.8%)

32 (23.4%)