Skip to main content

Table 3 Somatic alteration in cohesion-related genes in cancer A

From: Sister chromatid cohesion defects are associated with chromosome instability in Hodgkin lymphoma cells

Gene

Percentage of somatic alterationsBin

Breast (482C)

Colorectal (212C)

Lung (178C)

Ovarian (316C)

nsSNP

Del

Amp

nsSNP

Del

Amp

nsSNP

Del

Amp

nsSNP

Del

Amp

SMC1A

0.8

0.0

0.0

4.2

0.0

0.0

1.1

0.0

0.0

1.3

0.0

0.0

SMC3

0.2

0.2

0.0

1.4

0.9

0.0

2.8

0.6

0.0

0.3

0.0

0.0

RAD21

0.6

0.0

13.9

2.8

0.0

1.9

1.7

0.0

0.0

0.3

0.6

18.0

STAG2

1.2

0.0

0.0

2.8

0.0

0.0

3.4

0.0

0.0

0.9

0.0

0.0

PTTG1 B

0.0

0.4

0.2

0.5

0.0

0.0

1.1

0.6

0.0

0.0

0.0

0.9

ESPL1 C

1.5

0.0

0.2

3.3

0.0

0.0

4.5

0.0

0.6

0.0

0.3

0.6

  1. AOnly the Cancer Genome Atlas (TCGA) data is shown [21–24].
  2. Bnon-synonymous single nucleotide polymorphism (nsSNP), homozygous deletion (Del), gene amplification (Amp).
  3. CThe total number of tumors sequenced is indicated within parentheses.