Skip to main content

Table 1 Primers used in this study

From: The role of inflammation in HPV infection of the Oesophagus

Primer name

Sequence (5-3)

Length (bp)

pGL3 forw

CGGGCGCGGTCGGTAAAGT

380

pGL3 rev

AACAACGGCGGCGGGAAGT

 

p16 forw

GCCACTCTCACCCGACCCGT

130

p16 rev

TCAGCCAGGTCCACGGGCAGA

 

ITGA6 forw

GCCAGCAAGGTGTAGCAGCTA

101

ITGA6 rev

TTGCTCTACACGAACAATCCCTTT

 

SDC1 forw

CCCCGTTTCTGGTGGTCT

175

SDC1 rev

TGTCTGAAGGCTGAGTCCC

 

CD21 forw

GCCGACACGACTACCAACC

150

CD21 rev

AGCAAGTAACCAGATTCACAGC

 

IL8 forw

GAGAGTGATTGAGAGTGGACCAC

111

IL8 rev

CACAACCCTCTGCACCCAGTTT

 

IL6

SABiosciences (PPH00560B)

160

IL12A

SABiosciences (PPH00544B)

82

IFNGR1

SABiosciences (PPH00871B)

112

TNFA1P1

SABiosciences (PPH01176A)

101

GAPDH forw

GGCTCTCCAGAACATCATCC

192

GAPDH rev

GCCTGCTTCACCACCTTC

 

MY09a, b

CGTCCMARRGGAWACTGATC

452

MY11

GCMCAGGGWCATAAYAATGG

 

GP5+

TTTGTTACTGTGGTAGATACTAC

150

GP6+

GAAAAATAAACTGTAAATCATATTC

 

EBV-P23-1

CAGCTCCACGCAAAGTCAGATTG

482

EBV-P23-2

ATCAGAAATTTGCACTTTCTTTGC

 

EBV-P23-3

TTGACATGAGCATGGAAGAC

363

EBV-P23-4

CTCGTGGTCGTGTTCCCTCAC

 

β-actin forw

ATCATGTTTGAGACCTTCAA

320

β-actin rev

CATCTCTTGCTCGAAGTCCA

 
  1. a M, A+C: R, A+G; W, A+T; Y, C+T;
  2. b degenerate primers targeting the HPV late structural protein L1.