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Table 2 Top 15 up- and down-regulated protein coding genes following siRNA knockdown of T-UC.300A in SH-SY5Y cells

From: Expressional alterations in functional ultra-conserved non-coding rnas in response to all-transretinoic acid - induced differentiation in neuroblastoma cells

Gene name

Mean fold change T-UC.300A siRNA knockdown

Mean fold change after ATRA

INPP5D

3.72

 

CALCA

3.67

40.16

LOC221442

3.24

 

LOC644242

3.23

5.28

TTC9B

2.94

2.18

GDF15

2.93

5.10

USP9X

2.78

 

COL1A2

2.75

 

C10orf85

2.70

 

FLJ4184

2.62

 

HBE1

2.53

 

DPF3

2.44

 

LOC402199

2.43

37.41

FLJ44635

2.42

1.65

KLF2

2.38

 

RAB27B

0.35

 

FLJ44124

0.37

 

CNTNAP5

0.07

 

PAX5

0.38

 

INHBA

0.39

 

PCDHGA10

0.39

 

TOR1AIP2

0.39

0.23

CHR4155SYT

0.39

 

ZNF718

0.40

 

PRTG

0.41

 

HOOK1

0.41

0.38

LOC643647

0.42

0.59

LOC643523

0.42

 

IPMK

0.42

 

ERCC4

0.43

 
  1. Table shows fold change following knockdown across two biological repeats and also the corresponding mean fold change following ATRA if present.
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BMC Cancer

ISSN: 1471-2407

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