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Table 1 Primary information for 16 genotyped SNPs in oxidative pathway genes

From: Genetic oxidative stress variants and glioma risk in a Chinese population: a hospital-based case–control study

Genotyped SNPs Location/or Amino acid change MAF for Chinese in databasea P value for HWE testb % Genotyping rate
GPX1: rs1800668 C>T Promoter 0.078 0.706 99.1
CAT: rs769214 G>A 5’region 0.293 0.275 97.9
CAT: rs7943316 A>T 5’region 0.256 0.822 98.0
PON1: rs854552 T>C 3' UTR 0.179 0.195 99.1
PON1: rs662 G>A nsSNP/Q192R 0.430 0.424 97.7
NQO1: rs10517 C>T 3' UTR 0.381 0.397 97.7
NQO1: rs1800566 T>C nsSNP/S1P 0.478 0.757 97.5
MnSOD: rs4880 T>C nsSNP/V16A 0.146 0.914 98.8
MnSOD: rs5746136 G>A 3' UTR 0.422 0.264 98.7
SOD3: rs2536512 G>A nsSNP/T58A 0.100 0.730 98.6
SOD3: rs2695232 C>T 3' UTR 0.367 0.284 98.6
NOS1: rs2682826 C>T 3' UTR 0.256 0.163 98.0
NOS1: rs1047735 T>C nsSNP/Q902H 0.488 0.522 98.4
NOS2: rs2297518 G>A nsSNP/L608S 0.175 0.426 97.2
NOS2: rs10459953 G>C Promoter 0.489 0.790 99.1
NOS3: rs1799983 G>T nsSNP/D298E 0.111 0.586 97.9
  1. Abbreviations: MAF minor allele frequency, HWE Hardy-Weinberg equilibrium.
  2. aMinor allele frequency in the Chinese (CHB, Han Chinese in Beijing, China) population, as reported in dbSNP database.
  3. b P values were calculated from our control genotype.