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Table 1 Putative small molecule binding sites in EWS-FLI1 protein

From: Junction region of EWS-FLI1 fusion protein has a dominant negative effect in Ewing’s Sarcoma in vitro

SITE

Residue Number

Score

4

21,156–167,170,173,176-196,203-207,218- 223 247,248, 317–327, 389, 391, 394,447-450,454,498

1.151

3

109-112,117,120,121,124,125,128,129,146-148,150-153,298 305, 307, 308,310,315,317,324,325,327,328,331,332,335,345,347,380,382,383,385-389, 481-490

1.077

2

12-16,54-64,66-69,81-86,89-98,100-103,105,107,109,112,119 – 124, 127 , 128,132-146,272,276,290,296,311

1.047

6

25,65,71-75,77,209,213-217,236-247,250,254-264,278-286

1.043

5

1,14-16,29,31,32,35,36,41-44,49,50,54-59,66,67,90,92-97,261-264,267-272

1.032

9

150,151,158-160,315,317-329,350,377-380,387-391,456,461,489-492

1.026

1

22,25-34,36-40,163,188,190-211,214,216-218,246-254,257-259, 261,262,264,279-282,318,352,365-369,377,378,391-401,436,439-450,454

1.007

8

179-181,184,206-208,216,219-223,229-237,240,244,246,285,288,289

0.944

7

11,104,106,144-147,307-314,374,383-388,410-413,476,479-482,484

0.948

10

61-63,80-86,89,118,119,223,234,235,288-296

0.777

  1. The table lists the binding sites along with the amino acid residues which form the sites. Residues numbered in bold denote the region in the vicinity of the junction of EWS-FLI1 protein.