9p21.3 a
|
KYSE180
|
Neutral/Del
|
21958099-21968346
|
115.1 kb
|
C9orf53
§
, CDKN2A
*
, CDKN2B
†
, CDKN2B-AS1
†
|
FRA9C
|
|
KYSE450
|
Neutral/Del
|
21853263-21968346
| |
MTAP
§
, C9orf53
§
, CDKN2A
*
| |
|
KYSE510
|
Loss/Del
|
21958099-21968346
| |
C9orf53
§
, CDKN2A
*
, CDKN2B
†
, CDKN2B-AS1
†
| |
|
YES2
|
Neutral/Del
|
21853263-21957548
| |
MTAP
§
, C9orf53
†
, CDKN2A
†
| |
15q25.3
|
KYSE450
|
Neutral/Gain
|
86361096-86429254
|
154.2 kb
|
LINC00052
§
, NTRK3
*
, MRPL46
†
, MRPS11
†
| |
|
KYSE510
|
Neutral/Gain
|
86275066-86429254
| |
LINC00052
§
, NTRK3
*
, MRPL46
†
, MRPS11
†
| |
11q13.4
|
KYSE30
|
Amp/Loss
|
70964483-71305189
|
340.1 kb
|
KRTAP5-11
§
, FAM86C1, DEFB108B, RNF121
†
|
FRA11H
|
|
KYSE510
|
Amp/Neutral
|
70964483-71305189
| |
KRTAP5-11
§
, FAM86C1, DEFB108B, RNF121
†
| |
3q28
|
KYSE180
|
Gain/Gain
|
191171376-191222891
|
517.0 kb
|
TP63
§
, LEPREL1
*
, CLDN1
†
| |
|
KYSE510
|
Neutral/Gain
|
191610761-191688399
| |
CLDN1
§
, CLDN16, TMEM207
†
, IL1RAP
†
| |
10q26.3
|
KYSE30
|
Neutral/Gain
|
133045086-133476780
|
801.8 kb
|
TCERG1L
§
, PPP2R2D
†
| |
|
YES2
|
Neutral/Gain
|
133795639-133846905
| |
BNIP3
§
, JAKMIP3
*
, DPYSL4
†
| |
11q13.3
|
KYSE30
|
Amp/Amp
|
69339391-69569221
|
1.05 Mb
|
FGF3
§
, ANO1
†
, FADD
†
|
FRA11H
|
|
KYSE180
|
Amp/Amp
|
70182767-70386856
| |
CTTN
§
, SHANK2
*
, DHCR7
†
| |
4p13
|
KYSE150
|
Amp/Loss
|
41832777-42109513
|
1.15 Mb
|
SLC30A9
§
, BEND4, SHISA3
†
, ATP8A1
†
| |
|
KYSE510
|
Neutral/Loss
|
40955943-41226036
| |
UCHL1
§
, LIMCH1
*
, PHOX2B
†
| |
11p13
|
KYSE510
|
Neutral/Gain
|
33107818-33136537
|
1.2 Mb
|
TCP11L1
§
, PIGCP1
§
, CSTF3
*
, HIPK3
†
| |
|
YES2
|
Neutral/Gain
|
34278741-34307224
| |
NAT10
§
, ABTB2
*
, CAT
†
| |
8q24.21
|
KYSE450
|
Amp/Neutral
|
129216964-129574570
|
1.23 Mb
|
FAM84B
§
, POU5F1B, MYC
†
, PVT1
†
| |
|
KYSE510
|
Amp/Loss
|
129972316-130159085
| |
FAM84B
§
, POU5F1B, MYC
†
, PVT1
†
| |
|
YES2
|
Amp/Neutral
|
130159144-130451718
| |
far from genes, PVT1
§
, GSDMC
†
| |
2q35
|
KYSE30
|
Loss/Neutral
|
217432472-218386863
|
1.37 Mb
|
DIRC3
§
, TNS1, CXCR2P1
†
| |
|
KYSE150
|
Loss/Gain
|
218517852-218801703
| |
TNS1
§
, CXCR2P1, CXCR2, CXCR1, HMGB1P9, ARPC2
†
| |
1q31.1
|
KYSE150
|
Gain/Loss
|
186080345-186315797
|
1.40 Mb
|
PLA2G4A
§, FAM5C
†
|
FRA1K
|
|
KYSE450
|
Gain/Neutral
|
184912220-185051701
| |
PTGS2
§
, PLA2G4A
†
| |
21q21.1
|
KYSE30
|
Gain/Neutral
|
17060792-17145790
|
1.48 Mb
|
USP25
§
, C21orf34
§
, CXADR
†
| |
|
YES2
|
Gain/Neutral
|
18435266-18540695
| |
CHODL-AS1
§
, CHODL
†
, TMPRSS15
†
| |
9p21.3 b
|
KYSE180
|
Del/Neutral
|
21999029-22136626
|
1.45 Mb
|
CDKN2A
*
, CDKN2B, CDKN2B-AS1, DMRTA1
†
|
FRA9C
|
|
KYSE450
|
Del/Neutral
|
21980581-21993651
| |
CDKN2A
*
, CDKN2B, CDKN2B-AS1
*
, DMRTA1
†
| |
|
KYSE510
|
Del/Loss
|
22992377-23425976
| |
DMRTA1
*
, ELAVL2
†
| |
|
YES2
|
Del/Neutral
|
21999029-22136626
| |
CDKN2B, CDKN2B-AS1, DMRTA1
†
| |
18q12.2
|
KYSE450
|
Gain/Loss
|
33583906-33747373
|
1.64 Mb
|
CELF4
§
, LOC647946
†
|
FRA18A
|
|
KYSE510
|
Amp/Loss
|
32107441-32200063
| |
MOCOS
§
, FHOD3, C18orf10
†
| |
3p14.2
|
KYSE150
|
Gain/Loss
|
58573676-58887412
|
1.69 Mb
|
FAM107A
§
, FAM3D, C3orf67, FHIT
†
|
FRA3B
|
|
KYSE450
|
Neutral/Del
|
59933661-60267262
| |
FHIT
#
| |
3q12.1-q12.2
|
KYSE180
|
Neutral/Amp
|
100190484-100877203
|
1.86 Mb
|
TFG
§
, ABI3BP
*
, IMPG2
†
| |
|
KYSE450
|
Neutral/Gain
|
102009730-102076392
| |
DCBLD2
§
, COL8A1
†
| |
6p12.3-p12.2
|
KYSE150
|
Loss/Amp
|
51932658-52161439
|
1.9 Mb
|
PKHD1
§
, IL17A
†
, MCM3
†
| |
|
YES2
|
Gain/Gain
|
50261630-50627364
| |
DEFB112
§
, TFAP2D
†
| |