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Table 2 Altered chromosomal regions showing significant differences between lesions with HPV31 compared to those with HPV16 (FDR < 0.2).

From: HPV type-related chromosomal profiles in high-grade cervical intraepithelial neoplasia

  

Number of CIN2/3 cases loss vs. no loss

   

Region

Cytoband

HPV16 loss

HPV31 loss

FDR

HPV16 gain

HPV31 gain

chr2:222405165-227437895

2q36.1-q36.3

0

3

0.123

0

0

chr2:229728860-238929377

2q36.3-q37.3

0

3

0.123

0

0

chr4:49276564-62563622

4p11-q13.1

0

3

0.132

1

0

chr4:71160319-78914719

4q13.3-q21.1

0

3

0.132

1

0

chr4:79281456-84030000

4q21.21-q21.22

0

3

0.132

1

0

chr4:88363994-132792857

4q21.3-q28.3

0

3

0.132

1

0

chr4:133037098-163174205

4q28.3-q32.2

0

3

0.132

1

0

chr4:163304315-191027815

4q32.2-q35.2

0

3

0.132

1

0

chr6:431607-3540777

6p25.3-p25.2

0

3

0.121

1

0

chr6:7902624-26085970

6p24.3-p22.2

0

3

0.121

0

0

chr6:27956910-31362796

6p22.1-p21.33

0

3

0.121

0

0

chr6:32718990-36975126

6p21.32-p21.2

0

3

0.121

0

0

chr6:42755363-48175246

6p21.1-p12.3

0

3

0.121

0

0

chr6:48648135-106496239

6p12.3-q21

0

3

0.121

0

0

chr6:107106382-169915340

6q21-q27

0

3

0.121

0

0

chr8:142600766-145818157

8q24.3

0

3

0.127

5

3

chr17:3564934-7259932

17p13.2-p13.1

0

3

0.122

0

0

chr17:7328200-10781444

17p13.1-p12

0

3

0.122

0

0

chr17:12531028-22078641

17p12-p11.2

0

3

0.122

0

0

  

Number of CIN2/3 cases

gain vs. no gain

   

Region

Cytoband

HPV16gain

HPV31gain

FDR

HPV16loss

HPV31loss

chr1:107415557-114310216

1p13.3-p13.2

3

7

0.163

0

0

chr1:114666834-146812099

1p13.2-q21.2

3

7

0.163

0

0

chr1:148081768-151210846

1q21.2-q21.3

3

7

0.163

0

0

chr1:151380037-167624107

1q21.3-q24.3

3

7

0.163

0

0

chr1:168079451-172935386

1q24.3-q25.2

3

7

0.163

0

0

chr1:172950731-177727312

1q25.2-q25.3

2

7

0.063

0

0

chr1:177742624-194855793

1q25.3-q31.3

2

8

0.029

0

0

chr1:195212008-208655399

1q31.3-q32.3

2

8

0.029

0

0

chr1:212426726-217520338

1q41

2

8

0.029

0

0

chr1:218155880-223642833

1q41-q42.13

2

8

0.029

0

0

chr1:223683098-230121747

1q42.13-q42.2

2

7

0.063

0

0

chr1:231048153-234780716

1q42.3-q43

2

7

0.063

0

0

chr1:236021319-242608344

1q43-q44

2

8

0.029

0

0

chr1:242848259-246751472

1q44

2

8

0.029

0

0

  1. All lesions included in the analysis had > 1.5% aberrations