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Table 5 Primers and probes used for HPV16-Real-Time PCR

From: Cyclin A1 shows age-related expression in benign tonsils, HPV16-dependent overexpression in HNSCC and predicts lower recurrence rate in HNSCC independently of HPV16

Gene

Sequence (5’ → 3’)

HPV16 E6

Primer1, forward

CTGCAATGTTTCAGGACCCA

Primer2, reverse

TCATGTATAGTTGTTTGCAGCTCTGT

Probe

FAM-AGGAGCGACCCAGAAAGTTACCACAGTT-TAMRA

HPV16 E7

Primer1, forward

AAGTGTGACTCTACGCTTCGGTT

Primer2, reverse

GCCCATTAACAGGTCTTCCAAA

Probe

FAM-TGCGTACAAAGCACACACGTAGACATTCGTA-TAMRA

HBB

Primer1, forward

GTGAAGGCTCATGGCAAGAAAG

Primer2, reverse

CAGCTCACTCAGTGTGGCAAAG

Probe

FAM-ATGGCCTGGCTCACCTGGACAACC-TAMRA

  1. PCR: Polymerase chain reaction; HPV16: Human Papillomavirus 16; E6, E7: Oncogenes of HPV16; HBB: Human beta-globin.