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Table 1 Sequences of primers used in this study

From: Methylation profiling of Epstein-Barr virus immediate-early gene promoters, BZLF1 and BRLF1in tumors of epithelial, NK- and B-cell origins

vp

Primers

Sequence (5'-3')

Product size

Annealing Temp.(°C)

Cycles

RT-PCR

BZLF1F

GGGAGAAGCACCTCAACCTG

255-bp

55

35

 

BZLF1R

TTGCTTAAACTTGGCCCGGC

   
 

BRLF1F

CAAACAGACGCAGATGAGGC

443-bp

55

35

 

BRLF1R

GCGGTGCCTATGGTGGCAGG

   
 

BHRF1H2

GTCAAGGTTTCGTCTGTGTG

213-bp

55

35

 

BHRF1H3

TTCTCTTGCTGCTAGCTCCA

   
 

BLLF1F

GTGGATGTGGAACTGTTTCCAG

230-bp

55

35

 

BLLF1R

CTGTATCCACCGCGGATGTCAC

   
 

BARTA3

AGAGACCAGGCTGCTAAACA

232-bp

55

35

 

BARTA4

AACCAGCTTTCCTTTCCGAG

   
 

GAPDHF

GATGACCTTGCCCACAGCCT

303-bp

55

23

 

GAPDHR

ATCTCTGCCCCCTCTGCTGA

   

MSP

Zpm1

TCGGATTTTCGTGGGTTAATC

101-bp

64

42

 

Zpm2

CGAAACTAACGTTAAAAATCCG

   
 

Zpu1

ATTTGGATTTTTGTGGGTTAATT

101-bp

62

40

 

Zpu2

CCAAAACTAACATTAAAAATCCA

   
 

Rpm1

TAGGTATTTTGGATATTCGTAC

172-bp

64

42

 

Rpm3

GATTTAATCCCAACCGCCG

   
 

Rpu1

TGTAGGTATTTTGGATATTTGTAT

78-bp

62

40

 

Rpu2

CAAATCATTACTCCAAACTATCA

   

BGS

ZpMZP1

AAAAAACACCTAATATAAATCAAA

814-bp

62

42

 

ZpSC22

GTTAAAGAGGATTAGGTTTTTTT

   
 

RpMRP1

TCTTTTATAAACCATTAACATAAA

599-bp

60

42

 

RpMRP2

GAGATTGATAGGATTATATTGT

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