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Table 4 Synthetic view of the bisulfite conversion quality and the equivalence of methylation levels

From: Why do results conflict regarding the prognostic value of the methylation status in colon cancers? the role of the preservation method

LINE-1

1

2

4

 

6

 

8

9

    

14

15

 

17

 

20

 

23

24

26

  

30

31

32

 

34

35

36

  

39

40

MLH1

   

5

6

7

8

 

10

11

12

 

14

15

16

  

20

22

23

24

26

28

29

  

32

33

   

37

38

39

 

MGMT

1

2

 

5

  

8

9

  

12

13

14

15

16

 

18

 

22

23

   

29

30

31

 

33

34

35

36

 

38

39

40

  1. In each line (according to the corresponding marker) the identities of couples of frozen/FFPE DNAs (designated as couple 1 through couple 40) displaying both successful controls of bisulfite conversion and no differences in methylation levels are listed. Numbers in bold indicates couples displaying both a successful control of bisulfite conversion and no differences in methylation levels for the three markers.
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BMC Cancer

ISSN: 1471-2407

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