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Table 2 Methylation Δbeta values (methylation frequencies) between the outcome groups DOD and NED.

From: Identification of epigenetically regulated genes that predict patient outcome in neuroblastoma

Gene CpG site In CpG island Mean DOD (SD) Mean NED (SD) Δbeta value
SCNN1A cg18738906 yes 0.88 (0.21) 0.65 (0.27) 0.23***
  cg26215727 no 0.47 (0.20) 0.31 (0.17) 0.16***
PRKCDBP cg05628549 yes 0.53 (0.28) 0.34 (0.26) 0.18*
  cg16245261 yes 0.45 (0.34) 0.20 (0.23) 0.25**
  cg18392783 yes 0.50 (0.32) 0.26 (0.24) 0.24**
  cg18959478 yes 0.55 (0.31) 0.32 (0.27) 0.23**
KRT19 cg11462865 yes 0.65 (0.24) 0.43 (0.29) 0.22**
  cg16585619 no 0.82 (0.09) 0.81 (0.06) 0.01
TGFBI cg00386408 yes 0.40 (0.24) 0.32 (0.23) 0.08
  cg21034676 yes 0.28 (0.28) 0.23 (0.24) 0.04
POU2F2 cg21608489 yes 0.62 (0.22) 0.59 (0.20) 0.03
  cg22054191 yes 0.22 (0.08) 0.24 (0.10) -0.02
DUSP23 cg10663017 yes 0.20 (0.25) 0.11 (0.16) 0.09
  cg11104347 yes 0.17 (0.25) 0.10 (0.15) 0.08
DHRS3 cg01346152 yes 0.64 (0.30) 0.64 (0.26) 0.00
  cg09229231 yes 0.03 (0.01) 0.03 (0.01) 0.00
COL1A2 cg18511007 yes 0.42 (0.27) 0.35 (0.25) 0.07
  cg25300386 yes 0.37 (0.29) 0.32 (0.27) 0.05
  1. DOD, dead of disease; NED, no evidence of disease; *p ≤ 0.05; **p < 0.01; ***p < 0.001; SD, standard deviation