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Table 2 The percentage of DNA methylation in CpG rich regions in primary cancerous and histopathologically unchanged tissue samples from patients with CRC.

From: Decreased expression of 17β-hydroxysteroid dehydrogenase type 1 is associated with DNA hypermethylation in colorectal cancer located in the proximal colon

n = 52

Primary cancerous tissues

Histopathologically unchanged tissues

pa

  

Median (range)

Mean (± SD)

Median (range)

Mean (± SD)

 

Age

      

<60

10

21.05 (12.89-25.79)

20.66 ± 4.205

19.47 (13.16-28.42)

19.32 ± 4.875

0.5181

>60

42

20.00 (4.211-33.16)

20.91 ± 7.074

18.95 (2.105-36.21)

18.42 ± 6.779

0.1076

Gender

      

Female

20

24.21 (16.84-33.16)

24.42 ± 4.516

23.68 (13.68-28.42)

21.75 ± 4.499

0.1155

Male

32

18.95 (4.211-32.11)

19.51 ± 7.255

17.37 (2.105-36.21)

18.43 ± 7.206

0.5594

CRC localization

      

Proximal colon (cecum to transverse)

20

24.21 ( 13.68-33.16)

23.54 ± 5.793

17.63 ( 2.105435.79)

17.61 ± 6.050

0.0030

Distal colon (splenic flexture to sigmoid)

12

19.47 (4.211-28.95)

19.69 ± 7.159

18.95 (10.53-25.26)

18.85 ± 4.747

0.7498

Rectum

20

19.47 (6.316-28.42)

19.36 ± 6.292

19.47 (4.737-36.21)

19.30 ± 7.851

0.9810

Histologic grade

      

G1

4

21.32 (13.68-28.42)

21.18 ± 8.067

17.89 (2.105-27.89)

16.45 ± 10.97

0.5126

G2

35

20.00 (10.53-30.53)

21.17 ± 5.293

19.47 (4.737-28.42)

18.93 ± 5.884

0.0996

G3

13

21.84 (4.211-33.16)

20.21 ± 9.397

15.53 (12.63-36.21)

18.11 ± 6.727

0.4021

  1. The primary cancerous and histopathologically unchanged tissue samples from the same patients were used for genomic DNA isolation, followed by bisulfite conversion of cytosine to uracil. The three DNA fragments of the CpG rich region were then amplified by three pairs of primers complementary to the bisulfite-DNA modified sequence (Additional file 1, Additional file 2). To determine the percentage of methylation, the HRM profiles of the patients' DNA PCR products were compared to HRM profiles of the prepared standard PCR products. DNA methylation for each patient was presented as a percentage of methylation in three DNA amplified fragments located in the CpG rich region (Additional file 1). a Unpaired, two-tailed t-test.