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Table 3 Association results for four selected SNPs evaluated in two external GWAS (CORGI and VQ58), either by checking the original variant or a proxy SNP highly correlated with it (r2 > 0

From: Case-control study for colorectal cancer genetic susceptibility in EPICOLON: previously identified variants and mucins

  Present in I5? Present in I3? Proxy r2 and D' P-value (CORGI) P-value (VQ58)
rs698 no no rs1789924 1.000 1.000 0.1806 0.1658
rs1800795 no no rs1554606 0.868 0.932 0.1743 0.3346
rs3803185 no no rs4942859 0.716 1.000 0.5943 0.03525
rs2102302 no no rs2730351 0.853 1.000 0.1447 0.4666
  1. Significant P-values (< 0.05) are highlighted in bold.
  2. I5, Illumina HumanHap550; I3 Illumina HumanHap300.