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Table 2 Primers' sequences

From: HAX-1 overexpression, splicing and cellular localization in tumors

mRNA

forward primer

reverse primer

HAX1 variant I

5'-GACCTCGGAGCCACAGAGAT-3'

5'-GGTGCTGAGGACTATGGAAC-3'

GenBank: NM_006118

  

HAX1 variant II

5'-GGACCTCGGAGCTTCAG-3'

5'-TGACTCAGGACCTGGAAGTT-3' (semi-qPCR)

GenBank: NM_001018837

 

5'-CCATATCGCTGAAGATGCTA-3' (qPCR)

HAX1 variant III

5'-GACCTCGGAGGTGAGA-3'

5'-CCATATCGCTGAAGATGCTA-3'

GenBank: EU190983

  

HAX1 variant IV

5'-AGGAATTTGGCTTCGGCTTC-3' [26]

5'-TGCAGAAAGGTGGCAGGTGTT-3' [26]

GenBank: EU190982 and HAX1 variant V VEGA:OTTHUMT00000087654

  

CTSD

5'-GCTGTGAGGCCATTGTGGAC-3'

5'-GCGACACCTTGAGCGTGTAG-3'

GenBank: NM_001909

  

GAPDH

5'-GGTCGGAGTCAACGGATTTG-3' [27]

5'-ATGAGCCCCAGCCTTCTCCAT-3' [27]

GenBank: NM_002046

  

ACTB

5'-AGCCTCGCCTTTGCCGA-3' [28]

5'-GCGCGGCGATATCATCATC-3' [28]

GenBank: NM_001101

  
  1. Sequences of the primers used in reverse transcription semi-quantitative and quantitative PCR. GeneBank accession numbers are indicated for each transcript except for variant V where transcript ID from Vertebrate Genome Annotation (VEGA) database is shown.