TY - JOUR AU - Shen, L. AU - Tan, E. C. PY - 2005 DA - 2005// TI - Dimension reduction-based penalized logistic regression for cancer classification using microarray data JO - IEEE/ACM Trans Comput Biol Bioinform VL - 2 UR - https://doi.org/10.1109/TCBB.2005.22 DO - 10.1109/TCBB.2005.22 ID - Shen2005 ER - TY - JOUR AU - Wang, L. AU - Zhu, J. S. AU - Song, M. Q. AU - Chen, G. Q. AU - Chen, J. L. PY - 2006 DA - 2006// TI - Comparison of gene expression profiles between primary tumor and metastatic lesions in gastric cancer patients using laser microdissection and cDNA microarray JO - World J Gastroenterol VL - 12 UR - https://doi.org/10.3748/wjg.v12.i43.6949 DO - 10.3748/wjg.v12.i43.6949 ID - Wang2006 ER - TY - JOUR AU - Zigeuner, R. AU - Droschl, N. AU - Tauber, V. AU - Rehak, P. AU - Langner, C. PY - 2006 DA - 2006// TI - Biologic significance of fascin expression in clear cell renal cell carcinoma: systematic analysis of primary and metastatic tumor tissues using a tissue microarray technique JO - Urology VL - 68 UR - https://doi.org/10.1016/j.urology.2006.03.032 DO - 10.1016/j.urology.2006.03.032 ID - Zigeuner2006 ER - TY - JOUR AU - Jansen, M. P. AU - Foekens, J. A. AU - Klijn, J. G. AU - Berns, E. M. PY - 2005 DA - 2005// TI - Re: Limits of predictive models using microarray data for breast cancer clinical treatment outcome [comment] JO - J Natl Cancer Inst VL - 97 UR - https://doi.org/10.1093/jnci/dji433 DO - 10.1093/jnci/dji433 ID - Jansen2005 ER - TY - JOUR AU - Reid, J. F. AU - Lusa, L. AU - De Cecco, L. AU - Coradini, D. AU - Veneroni, S. AU - Daidone, M. G. AU - Gariboldi, M. AU - Pierotti, M. A. PY - 2005 DA - 2005// TI - Limits of predictive models using microarray data for breast cancer clinical treatment outcome JO - J Natl Cancer Inst VL - 97 UR - https://doi.org/10.1093/jnci/dji153 DO - 10.1093/jnci/dji153 ID - Reid2005 ER - TY - JOUR AU - Habeck, M. PY - 2001 DA - 2001// TI - DNA microarray technology to revolutionise cancer treatment JO - Lancet Oncol VL - 2 UR - https://doi.org/10.1016/S1470-2045(00)00206-0 DO - 10.1016/S1470-2045(00)00206-0 ID - Habeck2001 ER - TY - JOUR AU - Gevaert, O. AU - De Smet, F. AU - Timmerman, D. AU - Moreau, Y. AU - De Moor, B. PY - 2006 DA - 2006// TI - Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl230 DO - 10.1093/bioinformatics/btl230 ID - Gevaert2006 ER - TY - JOUR AU - Brennan, D. J. AU - O'Brien, S. L. AU - Fagan, A. AU - Culhane, A. C. AU - Higgins, D. G. AU - Duffy, M. J. AU - Gallagher, W. M. PY - 2005 DA - 2005// TI - Application of DNA microarray technology in determining breast cancer prognosis and therapeutic response JO - Expert Opin Biol Ther VL - 5 UR - https://doi.org/10.1517/14712598.5.8.1069 DO - 10.1517/14712598.5.8.1069 ID - Brennan2005 ER - TY - JOUR AU - Dolled-Filhart, M. AU - Camp, R. L. AU - Kowalski, D. P. AU - Smith, B. L. AU - Rimm, D. L. PY - 2003 DA - 2003// TI - Tissue microarray analysis of signal transducers and activators of transcription 3 (Stat3) and phospho-Stat3 (Tyr705) in node-negative breast cancer shows nuclear localization is associated with a better prognosis JO - Clin Cancer Res VL - 9 ID - Dolled-Filhart2003 ER - TY - JOUR AU - Barrett, T. AU - Troup, D. B. AU - Wilhite, S. E. AU - Ledoux, P. AU - Rudnev, D. AU - Evangelista, C. AU - Kim, I. F. AU - Soboleva, A. AU - Tomashevsky, M. AU - Edgar, R. PY - 2007 DA - 2007// TI - NCBI GEO: mining tens of millions of expression profiles--database and tools update JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl887 DO - 10.1093/nar/gkl887 ID - Barrett2007 ER - TY - JOUR AU - Edgar, R. AU - Domrachev, M. AU - Lash, A. E. PY - 2002 DA - 2002// TI - Gene Expression Omnibus: NCBI gene expression and hybridization array data repository JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.207 DO - 10.1093/nar/30.1.207 ID - Edgar2002 ER - TY - JOUR AU - Gur-Dedeoglu, B. AU - Konu, O. AU - Kir, S. AU - Ozturk, A. R. AU - Bozkurt, B. AU - Ergul, G. AU - Yulug, I. G. PY - 2008 DA - 2008// TI - A resampling-based meta-analysis for detection of differential gene expression in breast cancer JO - BMC Cancer VL - 8 UR - https://doi.org/10.1186/1471-2407-8-396 DO - 10.1186/1471-2407-8-396 ID - Gur-Dedeoglu2008 ER - TY - JOUR AU - Lin, R. AU - Dai, S. AU - Irwin, R. D. AU - Heinloth, A. N. AU - Boorman, G. A. AU - Li, L. PY - 2008 DA - 2008// TI - Gene set enrichment analysis for non-monotone association and multiple experimental categories JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-481 DO - 10.1186/1471-2105-9-481 ID - Lin2008 ER - TY - JOUR AU - Ochsner, S. A. AU - Steffen, D. L. AU - Hilsenbeck, S. G. AU - Chen, E. S. AU - Watkins, C. AU - McKenna, N. J. PY - 2009 DA - 2009// TI - GEMS (Gene Expression MetaSignatures), a Web resource for querying meta-analysis of expression microarray datasets: 17β-estradiol in MCF-7 cells JO - Cancer Res VL - 69 UR - https://doi.org/10.1158/0008-5472.CAN-08-3492 DO - 10.1158/0008-5472.CAN-08-3492 ID - Ochsner2009 ER - TY - JOUR AU - Rosenthal, R. PY - 1979 DA - 1979// TI - The file drawer problem and tolerance for null results JO - Psychol Bull VL - 86 UR - https://doi.org/10.1037/0033-2909.86.3.638 DO - 10.1037/0033-2909.86.3.638 ID - Rosenthal1979 ER - TY - JOUR AU - Dennis, G. AU - Sherman, B. T. AU - Hosack, D. A. AU - Yang, J. AU - Gao, W. AU - Lane, H. C. AU - Lempicki, R. A. PY - 2003 DA - 2003// TI - DAVID: Database for Annotation, Visualization, and Integrated Discovery JO - Genome Biol VL - 4 UR - https://doi.org/10.1186/gb-2003-4-5-p3 DO - 10.1186/gb-2003-4-5-p3 ID - Dennis2003 ER - TY - JOUR AU - Gorlov, I. P. AU - Byun, J. AU - Gorlova, O. Y. AU - Aparicio, A. M. AU - Efstathiou, E. AU - Logothetis, C. J. PY - 2009 DA - 2009// TI - Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data JO - BMC Med Genomics VL - 2 UR - https://doi.org/10.1186/1755-8794-2-48 DO - 10.1186/1755-8794-2-48 ID - Gorlov2009 ER - TY - JOUR AU - Byun, J. AU - Logothetis, C. J. AU - Gorlov, I. P. PY - 2009 DA - 2009// TI - Housekeeping genes in prostate tumorigenesis JO - Int J Cancer VL - 125 UR - https://doi.org/10.1002/ijc.24680 DO - 10.1002/ijc.24680 ID - Byun2009 ER - TY - JOUR AU - Yue, P. AU - Melamud, E. AU - Moult, J. PY - 2006 DA - 2006// TI - SNPs3D: candidate gene and SNP selection for association studies JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-166 DO - 10.1186/1471-2105-7-166 ID - Yue2006 ER - TY - JOUR AU - Chandran, U. R. AU - Ma, C. AU - Dhir, R. AU - Bisceglia, M. AU - Lyons-Weiler, M. AU - Liang, W. AU - Michalopoulos, G. AU - Becich, M. AU - Monzon, F. A. PY - 2007 DA - 2007// TI - Gene expression profiles of prostate cancer reveal involvement of multiple molecular pathways in the metastatic process JO - BMC Cancer VL - 7 UR - https://doi.org/10.1186/1471-2407-7-64 DO - 10.1186/1471-2407-7-64 ID - Chandran2007 ER - TY - JOUR AU - Stanbrough, M. AU - Bubley, G. J. AU - Ross, K. AU - Golub, T. R. AU - Rubin, M. A. AU - Penning, T. M. AU - Febbo, P. G. AU - Balk, S. P. PY - 2006 DA - 2006// TI - Increased expression of genes converting adrenal androgens to testosterone in androgen-independent prostate cancer JO - Cancer Res VL - 66 UR - https://doi.org/10.1158/0008-5472.CAN-05-4000 DO - 10.1158/0008-5472.CAN-05-4000 ID - Stanbrough2006 ER - TY - JOUR AU - Price, N. D. AU - Trent, J. AU - El-Naggar, A. K. AU - Cogdell, D. AU - Taylor, E. AU - Hunt, K. K. AU - Pollock, R. E. AU - Hood, L. AU - Shmulevich, I. AU - Zhang, W. PY - 2007 DA - 2007// TI - Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas JO - Proc Natl Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0611373104 DO - 10.1073/pnas.0611373104 ID - Price2007 ER - TY - JOUR AU - Yang, Y. H. AU - Dudoit, S. AU - Luu, P. AU - Lin, D. M. AU - Peng, V. AU - Ngai, J. AU - Speed, T. P. PY - 2002 DA - 2002// TI - Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.4.e15 DO - 10.1093/nar/30.4.e15 ID - Yang2002 ER - TY - JOUR AU - Nakagawa, T. AU - Kollmeyer, T. M. AU - Morlan, B. W. AU - Anderson, S. K. AU - Bergstralh, E. J. AU - Davis, B. J. AU - Asmann, Y. W. AU - Klee, G. G. AU - Ballman, K. V. AU - Jenkins, R. B. PY - 2008 DA - 2008// TI - A tissue biomarker panel predicting systemic progression after PSA recurrence post-definitive prostate cancer therapy JO - PLoS One VL - 3 UR - https://doi.org/10.1371/journal.pone.0002318 DO - 10.1371/journal.pone.0002318 ID - Nakagawa2008 ER - TY - JOUR AU - Nikitin, A. AU - Egorov, S. AU - Daraselia, N. AU - Mazo, I. PY - 2003 DA - 2003// TI - Pathway studio--the analysis and navigation of molecular networks JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg290 DO - 10.1093/bioinformatics/btg290 ID - Nikitin2003 ER - TY - STD TI - The pre-publication history for this paper can be accessed here:http://www.biomedcentral.com/1471-2407/10/599/prepub UR - http://www.biomedcentral.com/1471-2407/10/599/prepub ID - ref26 ER -