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Table 2 Annotation of the 114 DEGs by the BLAST search.

From: Identification of differentially expressed genes using an annealing control primer system in stage III serous ovarian carcinoma

Clone name Annotation GenBank accession no. E-value
U1 Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member B BC013003 4.00E-112
U2 Homo sapiens adaptor-related protein complex 3, delta 1 subunit (AP3D1), transcript variant 2 NM_003938 6.00E-10
U3 Homo sapiens adenine phosphoribosyltransferase (APRT), transcript variant 2 NM_001030018 7.00E-08
U4 Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-1B14, complete sequences AP000659 4.00E-73
U5 Homo sapiens chromosome 19 open reading frame 53 (C19orf53) NM_014047 1.00E-19
U6 Homo sapiens chromosome 1 open reading frame 115 (C1orf115) NM_024709 5.00E-24
U7 Homo sapiens coatomer protein complex, subunit alpha (COPA), transcript variant 1 NM_001098398 4.00E-22
U8 Homo sapiens dimethylarginine dimethylaminohydrolase 2 (DDAH2) NM_013974.1 2.00E-123
U9 Homo sapiens dimethylarginine dimethylaminohydrolase 2 BC001435 9.00E-168
U10 Homo sapiens dynein, light chain, LC8-type 1 (DYNLL1), transcript variant 3 NM_003746 0.00E+00
U11 Homo sapiens ferritin, light polypeptide BC004245 0.00E+00
U12 Homo sapiens glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2), nuclear gene encoding mitochondrial protein NM_002080 7.00E-21
U13 Homo sapiens sarcoma antigen NY-SAR-48 BC040564 3.00E-95
U14 Homo sapiens heat shock protein 90 kDa alpha (cytosolic), class B member 1 (HSP90AB1) NM_007355.2 0.00E+00
U15 Homo sapiens interferon, alpha-inducible protein 27 (IFI27), transcript variant 2 NM_005532 6.00E-99
U16 Homo sapiens interferon, alpha-inducible protein 6 (IFI6), transcript variant 3 NM_022873.2 2.00E-35
U17 Homo sapiens iron-responsive element binding protein 2 (IREB2) NM_004136 5.00E-66
U18 Homo sapiens keratinocyte associated protein 2 BC029806 5.00E-71
U19 PREDICTED: Homo sapiens similar to ribosomal protein S21, transcript variant 2 (LOC100291837) XM_002345433 1.00E-100
U20 Homo sapiens mesothelin (MSLN), transcript variant 1 NM_005823 0.00E+00
U21 Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha (NFKBIA) NM_020529 1.00E-95
U22 Homo sapiens nuclear distribution gene C homolog (A. nidulans) pseudogene 2 (NUDCP2) on chromosome 2 NG_001229 1.00E-101
U23 Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (PRPF8) NM_006445.3 4.00E-110
U24 Homo sapiens RAB5B, member RAS oncogene family (RAB5B) NM_002868 2.00E-123
U25 Homo sapiens cDNA FLJ76524 complete cds AK289930 2.00E-79
U26 Homo sapiens cell growth-inhibiting protein 34 mRNA, complete cds AY871274 0.00E+00
U27 Homo sapiens ribosomal protein L23 (RPL23) NM_000978 1.00E-87
U28 Homo sapiens ribosomal protein L6 pseudogene 27 (RPL6P27) on chromosome 18 NG_009652 2.00E-111
U29 Homo sapiens ribosomal protein S8 (RPS8) NM_001012 2.00E-67
U30 Homo sapiens TRK-fused gene BC023599 4.00E-79
U31 Homo sapiens ribosomal protein S8 BC070875 1.00E-60
U32 Homo sapiens mRNA similar to eukaryotic translation initiation factor 3, subunit 7 (zeta, 66/67 kD) BC011740 8.00E-142
U33 Homo sapiens ribosomal protein S24 BC000523 4.00E-45
U34 Homo sapiens cDNA, FLJ18539 AK311497 4.00E-26
U35 Homo sapiens cDNA clone IMAGE:2822193 BC005845 8.00E-155
U36 Homo sapiens ATPase, H+ transporting, lysosomal 14 kDa, V1 subunit F BC107854 3.00E-147
U37 Homo sapiens cytochrome c oxidase subunit VIIc (COX7C), nuclear gene encoding mitochondrial protein NM_001867 5.00E-145
U38 Homo sapiens tenascin XB (TNXB), transcript variant XB-S NM_032470 0.00E+00
U39 Homo sapiens septin 9 (SEPT9) on chromosome 17 NG_011683 5.00E-45
U40 Homo sapiens chromosome 11 open reading frame 92 (C11orf92) NM_207429.2 3.00E-45
U41 Homo sapiens D-dopachrome tautomerase (DDT), transcript variant 1 NM_001355.3 5.00E-94
U42 Homo sapiens single-stranded DNA binding protein 1 (SSBP1) NM_003143.1 0.00E+00
D1 Homo sapiens actin, beta (ACTB), NM_001101.2 0.00E+00
D2 Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member B (ANP32B) NM_006401.2 4.00E-115
D3 Homo sapiens Rho guanine nucleotide exchange factor (GEF) 17 (ARHGEF17) NM_014786 7.00E-37
D4 Homo sapiens ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 BC003564 0.00E+00
D5 Homo sapiens UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 (B3GALT6) NM_080605 8.00E-29
D6 Homo sapiens HLA-B associated transcript 2-like 1 (BAT2L1) NM_013318 4.00E-121
D7 Homo sapiens cDNA FLJ77629 complete cds, highly similar to Homo sapiens bone marrow stromal cell antigen 2 (BST2) AK291099 0.00E+00
D8 Homo sapiens basic transcription factor 3 (BTF3), transcript variant 1 NM_001037637 0.00E+00
D9 Homo sapiens complement component 1, s subcomponent (C1S), transcript variant 1 NM_201442 0.00E+00
D10 Homo sapiens CD74 molecule, major histocompatibility complex, class II invariant chain (CD74), transcript variant 1 NM_001025159.1 8.00E-179
D11 Homo sapiens chloride intracellular channel 1 BC064527 2.00E-143
D12 Homo sapiens CXXC finger 1 (PHD domain) (CXXC1), transcript variant 1 NM_001101654 1.00E-180
D13 Homo sapiens early growth response 1 (EGR1) NM_001964.2 0.00E+00
D14 Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (FAU) NM_001997 5.00E-99
D15 Homo sapiens F-box protein Fbx7 (FBX7) mRNA, complete cds AF129537 2.00E-105
D16 Homo sapiens Fc fragment of IgG, receptor, transporter, alpha BC008734 1.00E-79
D17 Homo sapiens forkhead box P1 (FOXP1), transcript variant 1 NM_032682 2.00E-130
D18 Homo sapiens guanine nucleotide binding protein (G protein), beta polypeptide 1 BC004186 1.00E-55
D19 Homo sapiens H19, imprinted maternally expressed transcript (non-protein coding) (H19), non-coding RNA NR_002196 2.00E-34
D20 Homo sapiens high density lipoprotein binding protein (HDLBP), transcript variant 2 NM_203346.2 0.00E+00
D21 Homo sapiens cDNA FLJ52975 complete cds, highly similar to Heterogeneous nuclear ribonucleoproteins C AK299923 0.00E+00
D22 Homo sapiens cDNA clone IMAGE:3898245 BC010864 1.00E-138
D23 Homo sapiens cDNA fis, A-KAT03057, highly similar to Homo sapiens mitochondrion, ATP synthase 6 AK026530 0.00E+00
D24 Homo sapiens cDNA: FLJ21566 fis, clone COL06467 AK025219 0.00E+00
D25 Homo sapiens cDNA: FLJ22996 fis, clone KAT11938 AK026649 4.00E-132
D26 Homo sapiens coiled-coil-helix-coiled-coil-helix domain containing 1 (CHCHD1) NM_203298.1 0.00E+00
D27 Homo sapiens mRNA similar to guanine nucleotide binding protein-like 1 BC048213 6.00E-29
D28 Homo sapiens mRNA similar to ribosomal protein L30 BC012823 2.00E-131
D29 Homo sapiens ribosomal protein, large, P1 BC053844 5.00E-152
D30 Homo sapiens sarcoma antigen NY-SAR-71 mRNA, partial cds AY211920 1.00E-138
D31 Homo sapiens tumor necrosis factor, alpha-induced protein 1 (endothelial) BC006208 8.00E-116
D32 Homo sapiens zinc finger, FYVE domain containing 20 BC021246 1.00E-138
D33 Homo sapiens heat shock factor binding protein 1 (HSBP1) NM_001537 1.00E-121
D34 Homo sapiens HtrA serine peptidase 1 (HTRA1) on chromosome 10 NG_011554 0.00E+00
D35 Human mitochondrial specific single stranded DNA binding protein mRNA, complete cds M94556 1.00E-146
D36 Homo sapiens immunoglobulin kappa constant BC095490 0.00E+00
D37 Homo sapiens immunoglobulin lambda locus, mRNA (cDNA clone MGC:88803 IMAGE:4765294), complete cds BC073786 3.00E-101
D38 Homo sapiens jun B proto-oncogene (JUNB) gene, complete cds AY751746 2.00E-20
D39 Homo sapiens L antigen family, member 3, mRNA (cDNA clone MGC:23038 IMAGE:4899044), complete cds BC015744 6.00E-29
D40 Homo sapiens laminin, beta 2 (laminin S) (LAMB2) NM_002292.3 0.00E+00
D41 Homo sapiens lectin, galactoside-binding, soluble, 1, mRNA (cDNA clone MGC:1818 IMAGE:2967299), complete cds BC001693 5.00E-52
D42 Homo sapiens lectin, galactoside-binding, soluble, 3, mRNA (cDNA clone MGC:2058 IMAGE:3050135), complete cds BC001120 0.00E+00
D43 Homo sapiens lectin, galactoside-binding, soluble, 3 (LGALS3), transcript variant 2, non-coding RNA NR_003225 0.00E+00
D44 Homo sapiens mRNA for LGALS3 protein variant protein AB209391 0.00E+00
D45 PREDICTED: Homo sapiens similar to ribosomal protein L13a (LOC100293761) XM_002344734 8.00E-51
D46 Homo sapiens mediator complex subunit 1 (MED1) NM_004774 1.00E-62
D47 Homo sapiens mediator complex subunit 14 (MED14) NM_004229 3.00E-49
D48 Homo sapiens myocyte enhancer factor 2C (MEF2C), transcript variant 2 NM_001131005 1.00E-99
D49 Homo sapiens murine retrovirus integration site 1 homolog (MRVI1), transcript variant 4 NM_001100167 0.00E+00
D50 Homo sapiens myosin light chain kinase (MYLK), transcript variant 3A NM_053027 2.00E-97
D51 Homo sapiens cDNA FLJ53659 complete cds, highly similar to Myosin light chain kinase, smooth muscle AK300610 0.00E+00
D52 Homo sapiens nuclear receptor co-repressor 2 (NCOR2), transcript variant 1 NM_006312.3 0.00E+00
D53 Homo sapiens nuclear enriched abundant transcript 1 (NEAT1) mRNA, complete sequence EF177379 1.00E-80
D54 Homo sapiens trophoblast MHC class II suppressor mRNA, complete sequence AF508303 1.00E-67
D55 Homo sapiens cDNA FLJ53682 complete cds, highly similar to RNA-binding protein 5 AK302766 2.00E-153
D56 Homo sapiens RNA binding motif protein 5 BC002957 2.00E-153
D57 Homo sapiens RNA binding motif protein 8A (RBM8A) NM_005105.2 1.00E-135
D58 Homo sapiens ribonuclease, RNase K (RNASEK) NM_001004333.3 6.00E-99
D59 Homo sapiens ribosomal protein L14 (RPL14), transcript variant 1 NM_001034996 0.00E+00
D60 Homo sapiens ribosomal protein L27a (RPL27A) NM_000990 4.00E-171
D61 Homo sapiens ribosomal protein L29 (RPL29) NM_000992.2 6.00E-154
D62 Homo sapiens ribosomal protein S16 (RPS16) NM_001020 7.00E-136
D63 Homo sapiens ribosomal protein S20 (RPS20), transcript variant 2 NM_001023 0.00E+00
D64 Homo sapiens ribosomal protein S21 (RPS21) NM_001024 8.00E-122
D65 Homo sapiens single-stranded DNA binding protein 1 BC000895 1.00E-146
D66 Homo sapiens transcription elongation factor A (SII)-like 2 (TCEAL2) NM_080390 0.00E+00
D67 Homo sapiens tubulointerstitial nephritis antigen-like 1 (TINAGL1) NM_022164 2.00E-153
D68 Homo sapiens transmembrane protein 185A (TMEM185A) NM_032508.1 0.00E+00
D69 Homo sapiens cDNA FLJ57738 complete cds, highly similar to Translationally-controlled tumor protein AK296587 2.00E-104
D70 Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 6 (XRCC6) NM_001469.3 0.00E+00
D71 Homo sapiens cDNA FLJ53970 complete cds, highly similar to ATP-dependent DNA helicase 2 subunit 1 AK293439 0.00E+00
D72 Homo sapiens phosphodiesterase 7B (PDE7B) on chromosome 6 NG_011994 3.00E-41
  1. The prefix U and D in the clone name represent the clone from the up- and down-regulated bands in the agarose gel. The expression of DEGs marked in bold was further confirmed by quantitative real-time PCR.