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Table 2 Annotation of the 114 DEGs by the BLAST search.

From: Identification of differentially expressed genes using an annealing control primer system in stage III serous ovarian carcinoma

Clone name

Annotation

GenBank accession no.

E-value

U1

Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member B

BC013003

4.00E-112

U2

Homo sapiens adaptor-related protein complex 3, delta 1 subunit (AP3D1), transcript variant 2

NM_003938

6.00E-10

U3

Homo sapiens adenine phosphoribosyltransferase (APRT), transcript variant 2

NM_001030018

7.00E-08

U4

Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-1B14, complete sequences

AP000659

4.00E-73

U5

Homo sapiens chromosome 19 open reading frame 53 (C19orf53)

NM_014047

1.00E-19

U6

Homo sapiens chromosome 1 open reading frame 115 (C1orf115)

NM_024709

5.00E-24

U7

Homo sapiens coatomer protein complex, subunit alpha (COPA), transcript variant 1

NM_001098398

4.00E-22

U8

Homo sapiens dimethylarginine dimethylaminohydrolase 2 (DDAH2)

NM_013974.1

2.00E-123

U9

Homo sapiens dimethylarginine dimethylaminohydrolase 2

BC001435

9.00E-168

U10

Homo sapiens dynein, light chain, LC8-type 1 (DYNLL1), transcript variant 3

NM_003746

0.00E+00

U11

Homo sapiens ferritin, light polypeptide

BC004245

0.00E+00

U12

Homo sapiens glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2), nuclear gene encoding mitochondrial protein

NM_002080

7.00E-21

U13

Homo sapiens sarcoma antigen NY-SAR-48

BC040564

3.00E-95

U14

Homo sapiens heat shock protein 90 kDa alpha (cytosolic), class B member 1 (HSP90AB1)

NM_007355.2

0.00E+00

U15

Homo sapiens interferon, alpha-inducible protein 27 (IFI27), transcript variant 2

NM_005532

6.00E-99

U16

Homo sapiens interferon, alpha-inducible protein 6 (IFI6), transcript variant 3

NM_022873.2

2.00E-35

U17

Homo sapiens iron-responsive element binding protein 2 (IREB2)

NM_004136

5.00E-66

U18

Homo sapiens keratinocyte associated protein 2

BC029806

5.00E-71

U19

PREDICTED: Homo sapiens similar to ribosomal protein S21, transcript variant 2 (LOC100291837)

XM_002345433

1.00E-100

U20

Homo sapiens mesothelin (MSLN), transcript variant 1

NM_005823

0.00E+00

U21

Homo sapiens nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha (NFKBIA)

NM_020529

1.00E-95

U22

Homo sapiens nuclear distribution gene C homolog (A. nidulans) pseudogene 2 (NUDCP2) on chromosome 2

NG_001229

1.00E-101

U23

Homo sapiens PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (PRPF8)

NM_006445.3

4.00E-110

U24

Homo sapiens RAB5B, member RAS oncogene family (RAB5B)

NM_002868

2.00E-123

U25

Homo sapiens cDNA FLJ76524 complete cds

AK289930

2.00E-79

U26

Homo sapiens cell growth-inhibiting protein 34 mRNA, complete cds

AY871274

0.00E+00

U27

Homo sapiens ribosomal protein L23 (RPL23)

NM_000978

1.00E-87

U28

Homo sapiens ribosomal protein L6 pseudogene 27 (RPL6P27) on chromosome 18

NG_009652

2.00E-111

U29

Homo sapiens ribosomal protein S8 (RPS8)

NM_001012

2.00E-67

U30

Homo sapiens TRK-fused gene

BC023599

4.00E-79

U31

Homo sapiens ribosomal protein S8

BC070875

1.00E-60

U32

Homo sapiens mRNA similar to eukaryotic translation initiation factor 3, subunit 7 (zeta, 66/67 kD)

BC011740

8.00E-142

U33

Homo sapiens ribosomal protein S24

BC000523

4.00E-45

U34

Homo sapiens cDNA, FLJ18539

AK311497

4.00E-26

U35

Homo sapiens cDNA clone IMAGE:2822193

BC005845

8.00E-155

U36

Homo sapiens ATPase, H+ transporting, lysosomal 14 kDa, V1 subunit F

BC107854

3.00E-147

U37

Homo sapiens cytochrome c oxidase subunit VIIc (COX7C), nuclear gene encoding mitochondrial protein

NM_001867

5.00E-145

U38

Homo sapiens tenascin XB (TNXB), transcript variant XB-S

NM_032470

0.00E+00

U39

Homo sapiens septin 9 (SEPT9) on chromosome 17

NG_011683

5.00E-45

U40

Homo sapiens chromosome 11 open reading frame 92 (C11orf92)

NM_207429.2

3.00E-45

U41

Homo sapiens D-dopachrome tautomerase (DDT), transcript variant 1

NM_001355.3

5.00E-94

U42

Homo sapiens single-stranded DNA binding protein 1 (SSBP1)

NM_003143.1

0.00E+00

D1

Homo sapiens actin, beta (ACTB),

NM_001101.2

0.00E+00

D2

Homo sapiens acidic (leucine-rich) nuclear phosphoprotein 32 family, member B (ANP32B)

NM_006401.2

4.00E-115

D3

Homo sapiens Rho guanine nucleotide exchange factor (GEF) 17 (ARHGEF17)

NM_014786

7.00E-37

D4

Homo sapiens ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1

BC003564

0.00E+00

D5

Homo sapiens UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6 (B3GALT6)

NM_080605

8.00E-29

D6

Homo sapiens HLA-B associated transcript 2-like 1 (BAT2L1)

NM_013318

4.00E-121

D7

Homo sapiens cDNA FLJ77629 complete cds, highly similar to Homo sapiens bone marrow stromal cell antigen 2 (BST2)

AK291099

0.00E+00

D8

Homo sapiens basic transcription factor 3 (BTF3), transcript variant 1

NM_001037637

0.00E+00

D9

Homo sapiens complement component 1, s subcomponent (C1S), transcript variant 1

NM_201442

0.00E+00

D10

Homo sapiens CD74 molecule, major histocompatibility complex, class II invariant chain (CD74), transcript variant 1

NM_001025159.1

8.00E-179

D11

Homo sapiens chloride intracellular channel 1

BC064527

2.00E-143

D12

Homo sapiens CXXC finger 1 (PHD domain) (CXXC1), transcript variant 1

NM_001101654

1.00E-180

D13

Homo sapiens early growth response 1 (EGR1)

NM_001964.2

0.00E+00

D14

Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (FAU)

NM_001997

5.00E-99

D15

Homo sapiens F-box protein Fbx7 (FBX7) mRNA, complete cds

AF129537

2.00E-105

D16

Homo sapiens Fc fragment of IgG, receptor, transporter, alpha

BC008734

1.00E-79

D17

Homo sapiens forkhead box P1 (FOXP1), transcript variant 1

NM_032682

2.00E-130

D18

Homo sapiens guanine nucleotide binding protein (G protein), beta polypeptide 1

BC004186

1.00E-55

D19

Homo sapiens H19, imprinted maternally expressed transcript (non-protein coding) (H19), non-coding RNA

NR_002196

2.00E-34

D20

Homo sapiens high density lipoprotein binding protein (HDLBP), transcript variant 2

NM_203346.2

0.00E+00

D21

Homo sapiens cDNA FLJ52975 complete cds, highly similar to Heterogeneous nuclear ribonucleoproteins C

AK299923

0.00E+00

D22

Homo sapiens cDNA clone IMAGE:3898245

BC010864

1.00E-138

D23

Homo sapiens cDNA fis, A-KAT03057, highly similar to Homo sapiens mitochondrion, ATP synthase 6

AK026530

0.00E+00

D24

Homo sapiens cDNA: FLJ21566 fis, clone COL06467

AK025219

0.00E+00

D25

Homo sapiens cDNA: FLJ22996 fis, clone KAT11938

AK026649

4.00E-132

D26

Homo sapiens coiled-coil-helix-coiled-coil-helix domain containing 1 (CHCHD1)

NM_203298.1

0.00E+00

D27

Homo sapiens mRNA similar to guanine nucleotide binding protein-like 1

BC048213

6.00E-29

D28

Homo sapiens mRNA similar to ribosomal protein L30

BC012823

2.00E-131

D29

Homo sapiens ribosomal protein, large, P1

BC053844

5.00E-152

D30

Homo sapiens sarcoma antigen NY-SAR-71 mRNA, partial cds

AY211920

1.00E-138

D31

Homo sapiens tumor necrosis factor, alpha-induced protein 1 (endothelial)

BC006208

8.00E-116

D32

Homo sapiens zinc finger, FYVE domain containing 20

BC021246

1.00E-138

D33

Homo sapiens heat shock factor binding protein 1 (HSBP1)

NM_001537

1.00E-121

D34

Homo sapiens HtrA serine peptidase 1 (HTRA1) on chromosome 10

NG_011554

0.00E+00

D35

Human mitochondrial specific single stranded DNA binding protein mRNA, complete cds

M94556

1.00E-146

D36

Homo sapiens immunoglobulin kappa constant

BC095490

0.00E+00

D37

Homo sapiens immunoglobulin lambda locus, mRNA (cDNA clone MGC:88803 IMAGE:4765294), complete cds

BC073786

3.00E-101

D38

Homo sapiens jun B proto-oncogene (JUNB) gene, complete cds

AY751746

2.00E-20

D39

Homo sapiens L antigen family, member 3, mRNA (cDNA clone MGC:23038 IMAGE:4899044), complete cds

BC015744

6.00E-29

D40

Homo sapiens laminin, beta 2 (laminin S) (LAMB2)

NM_002292.3

0.00E+00

D41

Homo sapiens lectin, galactoside-binding, soluble, 1, mRNA (cDNA clone MGC:1818 IMAGE:2967299), complete cds

BC001693

5.00E-52

D42

Homo sapiens lectin, galactoside-binding, soluble, 3, mRNA (cDNA clone MGC:2058 IMAGE:3050135), complete cds

BC001120

0.00E+00

D43

Homo sapiens lectin, galactoside-binding, soluble, 3 (LGALS3), transcript variant 2, non-coding RNA

NR_003225

0.00E+00

D44

Homo sapiens mRNA for LGALS3 protein variant protein

AB209391

0.00E+00

D45

PREDICTED: Homo sapiens similar to ribosomal protein L13a (LOC100293761)

XM_002344734

8.00E-51

D46

Homo sapiens mediator complex subunit 1 (MED1)

NM_004774

1.00E-62

D47

Homo sapiens mediator complex subunit 14 (MED14)

NM_004229

3.00E-49

D48

Homo sapiens myocyte enhancer factor 2C (MEF2C), transcript variant 2

NM_001131005

1.00E-99

D49

Homo sapiens murine retrovirus integration site 1 homolog (MRVI1), transcript variant 4

NM_001100167

0.00E+00

D50

Homo sapiens myosin light chain kinase (MYLK), transcript variant 3A

NM_053027

2.00E-97

D51

Homo sapiens cDNA FLJ53659 complete cds, highly similar to Myosin light chain kinase, smooth muscle

AK300610

0.00E+00

D52

Homo sapiens nuclear receptor co-repressor 2 (NCOR2), transcript variant 1

NM_006312.3

0.00E+00

D53

Homo sapiens nuclear enriched abundant transcript 1 (NEAT1) mRNA, complete sequence

EF177379

1.00E-80

D54

Homo sapiens trophoblast MHC class II suppressor mRNA, complete sequence

AF508303

1.00E-67

D55

Homo sapiens cDNA FLJ53682 complete cds, highly similar to RNA-binding protein 5

AK302766

2.00E-153

D56

Homo sapiens RNA binding motif protein 5

BC002957

2.00E-153

D57

Homo sapiens RNA binding motif protein 8A (RBM8A)

NM_005105.2

1.00E-135

D58

Homo sapiens ribonuclease, RNase K (RNASEK)

NM_001004333.3

6.00E-99

D59

Homo sapiens ribosomal protein L14 (RPL14), transcript variant 1

NM_001034996

0.00E+00

D60

Homo sapiens ribosomal protein L27a (RPL27A)

NM_000990

4.00E-171

D61

Homo sapiens ribosomal protein L29 (RPL29)

NM_000992.2

6.00E-154

D62

Homo sapiens ribosomal protein S16 (RPS16)

NM_001020

7.00E-136

D63

Homo sapiens ribosomal protein S20 (RPS20), transcript variant 2

NM_001023

0.00E+00

D64

Homo sapiens ribosomal protein S21 (RPS21)

NM_001024

8.00E-122

D65

Homo sapiens single-stranded DNA binding protein 1

BC000895

1.00E-146

D66

Homo sapiens transcription elongation factor A (SII)-like 2 (TCEAL2)

NM_080390

0.00E+00

D67

Homo sapiens tubulointerstitial nephritis antigen-like 1 (TINAGL1)

NM_022164

2.00E-153

D68

Homo sapiens transmembrane protein 185A (TMEM185A)

NM_032508.1

0.00E+00

D69

Homo sapiens cDNA FLJ57738 complete cds, highly similar to Translationally-controlled tumor protein

AK296587

2.00E-104

D70

Homo sapiens X-ray repair complementing defective repair in Chinese hamster cells 6 (XRCC6)

NM_001469.3

0.00E+00

D71

Homo sapiens cDNA FLJ53970 complete cds, highly similar to ATP-dependent DNA helicase 2 subunit 1

AK293439

0.00E+00

D72

Homo sapiens phosphodiesterase 7B (PDE7B) on chromosome 6

NG_011994

3.00E-41

  1. The prefix U and D in the clone name represent the clone from the up- and down-regulated bands in the agarose gel. The expression of DEGs marked in bold was further confirmed by quantitative real-time PCR.