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Table 2 Novel RASSF1C target genes in T47D breast cancer cells

From: Ras-association domain family 1C protein promotes breast cancer cell migration and attenuates apoptosis

Gene

Gene discription

Fold change

EFEM1

EGF-containing fibulin-like extracellular matrix protein 1

5.76

GHR

growth hormone receptor

4.3

EGR1

early growth response 1

5.9

TP53IN1

tumor protein p53 inducible nuclear protein 1

4.46

MRAS

muscle RAS oncogene homolog

3.8

MTUS1

mitochondrial tumor suppressor 1

-2

PROS

protein S (alpha)

4

EMP1

epithelial membrane protein 1

-7.5

HOXA1

homeobox A1

4.6

SEPP1

selenoprotein P, plasma, 1

7.92

MGMT

O-6-methylguanine-DNA methyltransferase

2.1

PAK1

p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)

2.1

CXCR4

chemokine (C-X-C motif) receptor 4

3.6

CREG

cellular repressor of E1A-stimulated genes 1

11.2

BMPR2

bone morphogenetic protein receptor, type II (serine/threonine kinase)

2

Noggin

Noggin

-3.6

SSP1

(osteopontin, bone sialoprotein I, early T-lymphocyte activation 1)

-14.5

TGM2

TGM2: transglutaminase 2 (protein-glutamine-gamma-glutamyltransferase)

3

SRPX

sushi-repeat-containing protein, X-linked

-7.25

SAMD5

sterile alpha motif domain containing 5

-11.47

MAP1B

microtubule-associated protein 1B

-11.7

RNF182

ring finger protein 182

-13.8

TMEM8

transmembrane protein 158

-11.29

LDB2

LIM domain binding 2

-5.85

IGFBP3

insulin-like growth factor binding protein 3

-4.96

COL131

collagen, type XIII, alpha 1

-8.69

FRMDB

FERM domain containing 4B

-5.2

SOX9

SRY (sex determining region Y)-box 9

-4.5

DAB2

disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)

-2.55

APOE

apolipoprotein E

3.74

CCND2

cyclin D2

-3

SPANX1

sperm protein associated with the nucleus, X-linked, family member A1

7.38

SPANX1

SPANX family, member B1

17.7

HLADP1

major histocompatibility complex, class II, DP alpha 1

12.7

HIST1H2BC

histone cluster 1 H2BC

5.34

DACH1

dachshund homolog 1 (Drosophila)

7.63

PCDH7

protocadherin 7

8.58

MYL9

myosin, light chain 9, regulatory

9

DPEP3

dipeptidase 3

10.66

CPE

carboxypeptidase E

11.47

LITAF

lipopolysaccharide-induced TNF facto

8.17

ABAT

4-aminobutyrate aminotransferase

10.82

  1. List of novel RASSF1C target genes identified in T47D breast cancer cells using microarray analysis. Affymetrix-microarray analysis was performed using T47D cells over-expressing RASSF1C as outlined in Materials and Methods section. Data analysis was performed using the dChip program [21] and the thresholds for selecting significant genes were set at a relative difference > = 1.5-fold (or/and 2-fold), absolute signal difference > = 50, and p < 0.05. Genes that met all three criteria were considered as significant changes. Comparison results with False Discovery Rate (FDR) <5% was considered as a valid analysis.