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Table 3 Integration of LOH and Gene Expression Data.

From: Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast

Cyto band Copy Number Location Gene Symbol p-value Fold-Change # Samples with Copy-Neutral LOH #
Sampleswith loss and LOH
Mean of Samples with loss and LOH State
1p13.2 chr1.111970656.112340133 C1orf183 8.2E-06 -2.22 2 1 1.53 CN-LOH
1p13.2 chr1.111970656.112340133 KCND3 1.0E-03 -3.75 2 1 1.53 CN-LOH
1p22.2 chr1.89334399.89586461 GBP4 5.1E-06 -2.13 2 1 1.57 CN-LOH
6p21.32 chr6.31698877.32259200 HSPA1A /// HSPA1B 1.4E-03 4.12 4    CN-LOH
12q24.12 chr12.109960751.111501415 ALDH2 3.8E-05 -11.38 4    CN-LOH
16q12.1 chr16.45091910.46733079 PHKB 5.0E-04 -2.06 7    CN-LOH
16q22.1 chr16.67206157.67268948 CDH3 5.0E-04 6.72 2 1 1.44 CN-LOH
16q22.1 chr16.67268948.67273787 CDH3 5.0E-04 6.72 2 1 1.49 CN-LOH
16q22.1 chr16.67273787.67334399 CDH3 5.0E-04 6.72 2 1 1.49 CN-LOH
16q22.1 chr16.67273787.67334399 CDH1 4.1E-09 43.24 2 1 1.49 CN-LOH
16q22.1 chr16.67334399.67396764 CDH1 4.1E-09 43.24 2 1 1.49 CN-LOH
19q13.41 chr19.57065800.60767150 ZNF331 1.2E-04 -4.34 3    CN-LOH
19q13.41 chr19.57065800.60767150 MYADM 7.5E-07 -3.21 3    CN-LOH
22q12.1 chr22.26560066.27655923 TTC28 9.8E-08 -5.33 3    CN-LOH
22q12.1 chr22.26560066.27655923 XBP1 3.4E-04 4.50 3    CN-LOH
Xq24 chrX.118031377.119358070 LONRF3 2.4E-05 -6.96 0 3 1.48 Loss with LOH
Xq25 chrX.123198797.123430595 ODZ1 6.2E-06 -8.12 0 3 1.47 Loss with
LOH
Xq25 chrX.128574610.129127918 XPNPEP2 4.6E-07 -3.33 0 3 1.48 Loss with LOH