Table 3 Integration of LOH and Gene Expression Data.
Cyto band | Copy Number Location | Gene Symbol | p-value | Fold-Change | # Samples with Copy-Neutral LOH | # Sampleswith loss and LOH | Mean of Samples with loss and LOH | State |
|---|---|---|---|---|---|---|---|---|
1p13.2 | chr1.111970656.112340133 | C1orf183 | 8.2E-06 | -2.22 | 2 | 1 | 1.53 | CN-LOH |
1p13.2 | chr1.111970656.112340133 | KCND3 | 1.0E-03 | -3.75 | 2 | 1 | 1.53 | CN-LOH |
1p22.2 | chr1.89334399.89586461 | GBP4 | 5.1E-06 | -2.13 | 2 | 1 | 1.57 | CN-LOH |
6p21.32 | chr6.31698877.32259200 | HSPA1A /// HSPA1B | 1.4E-03 | 4.12 | 4 | Â | Â | CN-LOH |
12q24.12 | chr12.109960751.111501415 | ALDH2 | 3.8E-05 | -11.38 | 4 | Â | Â | CN-LOH |
16q12.1 | chr16.45091910.46733079 | PHKB | 5.0E-04 | -2.06 | 7 | Â | Â | CN-LOH |
16q22.1 | chr16.67206157.67268948 | CDH3 | 5.0E-04 | 6.72 | 2 | 1 | 1.44 | CN-LOH |
16q22.1 | chr16.67268948.67273787 | CDH3 | 5.0E-04 | 6.72 | 2 | 1 | 1.49 | CN-LOH |
16q22.1 | chr16.67273787.67334399 | CDH3 | 5.0E-04 | 6.72 | 2 | 1 | 1.49 | CN-LOH |
16q22.1 | chr16.67273787.67334399 | CDH1 | 4.1E-09 | 43.24 | 2 | 1 | 1.49 | CN-LOH |
16q22.1 | chr16.67334399.67396764 | CDH1 | 4.1E-09 | 43.24 | 2 | 1 | 1.49 | CN-LOH |
19q13.41 | chr19.57065800.60767150 | ZNF331 | 1.2E-04 | -4.34 | 3 | Â | Â | CN-LOH |
19q13.41 | chr19.57065800.60767150 | MYADM | 7.5E-07 | -3.21 | 3 | Â | Â | CN-LOH |
22q12.1 | chr22.26560066.27655923 | TTC28 | 9.8E-08 | -5.33 | 3 | Â | Â | CN-LOH |
22q12.1 | chr22.26560066.27655923 | XBP1 | 3.4E-04 | 4.50 | 3 | Â | Â | CN-LOH |
Xq24 | chrX.118031377.119358070 | LONRF3 | 2.4E-05 | -6.96 | 0 | 3 | 1.48 | Loss with LOH |
Xq25 | chrX.123198797.123430595 | ODZ1 | 6.2E-06 | -8.12 | 0 | 3 | 1.47 | Loss with LOH |
Xq25 | chrX.128574610.129127918 | XPNPEP2 | 4.6E-07 | -3.33 | 0 | 3 | 1.48 | Loss with LOH |