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Table 2 Integration of copy number with gene expression data in > samples

From: Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast

Cyto-band Gene Symbol p-value Fold-Change length (bps) Copy Number Location Copy state #
Samples
Mean copy #
1q21.2 SV2A 0.000790217 2.35 1228718 chr1.147361719.148590436 gain 6 2.93
1q21.2 LOC730631 0.000454988 2.12 1228718 chr1.147361719.148590436 gain 6 2.93
1q21.3 S100A14 0.00103078 13.49 145569 chr1.151766410.151911978 gain 6 3.27
1q22 MUC1 3.86E-05 5.12 1636566 chr1.152807193.154443758 gain 6 2.79
1q23.2 IGSF9 1.70E-06 6.69 82022 chr1.158101327.158183348 gain 5 2.75
1q25.2 TDRD5 5.76E-08 2.49 76749 chr1.177855168.177931916 gain 6 3.12
1q32.1 PCTK3 0.000647034 2.12 57388 chr1.203711819.203769206 gain 7 2.12
1q41 CAPN8 5.28E-05 7.01 1214960 chr1.221390196.222605155 gain 6 2.76
1p34.1 ST3GAL3 0.00102362 -3.50 52158 chr1.44004795.44064981 loss 5 1.14
11p13 PRRG4 1.96E-07 4.61 129389 chr11.32799917.32929305 gain 7 3.42
11p11.2 PACSIN3 0.000775686 2.11 271627 chr11.47122445.47394071 gain 5 3.48
14q24.1 WDR22 5.46E-09 -2.06 2588491 chr14.68430400.69090879 loss 5 1.49
15q23 Hs.655686 5.25E-06 11.48 1692519 chr15.68908327.69703941 gain 5 2.58
15q23 Hs.655868 0.000235216 3.68 504419 chr15.69797809.70302227 gain 6 2.61
15q24.1 NEO1 0.00012075 2.11 843811 chr15.70912294.71756104 gain 7 3.37
15q26.1 ISG20 1.92E-06 3.16 249550 chr15.86957456.87207005 gain 6 2.84
15q26.1 FAM174B 0.000142779 4.64 127979 chr15.90953124.91081102 gain 5 3.50
15q26.1 FAM174B 4.31E-07 3.39 127979 chr15.90953124.91081102 gain 5 3.50
5p15.33 PLEKHG4B 0.000905578 2.33 352294 chr5.165712.518005 gain 5 3.26
6p24.3 TFAP2A 0.000412702 28.92 61721 chr6.10487807.10549527 gain 7 4.42
8q23.3 TRPS1 0.000200736 4.98 1434519 chr8.116140217.117574735 gain 5 3.65
8p22 DLC1 7.07E-05 -6.72 6333283 chr8.11614644.13945615 loss 6 1.49
8p21.3 GFRA2 1.72E-10 -2.18 1541653 chr8.20297943.21825688 loss 6 1.38
8p21.2 EBF2 5.96E-08 -4.59 61487 chr8.25917207.25978693 loss 5 1.46
8p21.2 AK057935 0.000340165 -8.34 798818 chr8.26553995.26777510 loss 6 1.47
8p12 Hs.654357 3.39E-06 -3.64 1469584 chr8.29124128.30492208 loss 5 1.48
8q12.1 SDR16C5 0.00075179 7.97 689931 chr8.56762001.57376988 gain 5 2.99
8p23.1 ANGPT2 2.01E-06 -6.11 168439 chr8.6342789.6444367 loss 5 1.45
8p23.1 DEFA1 /// DEFA3 /// LOC728358 6.87E-05 -3.05 1406779 chr8.6789275.6889920 loss 6 1.40
8q21.13 CHMP4C 0.000234239 16.46 5693518 chr8.81713285.87406802 gain 5 3.22
Xq22.3 Hs.715776 2.99E-07 -9.24 16623258 chrX.102883803.119358070 loss 5 1.52
Xq22.3 LOC100130886 /// TMEM164 0.000421953 -2.37 16623258 chrX.102883803.119358070 loss 5 1.52
Xq24 GLUD2 6.93E-06 -2.65 2753995 chrX.119455338.122209332 loss 5 1.51
Xq25 XPNPEP2 6.87E-08 -3.81 7869983 chrX.128566292.129127918 loss 5 1.51