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Table 1 PCR primers used for bisulfite sequencing and methylation specific PCR

From: Putative tumour-suppressor gene DAB2is frequently down regulated by promoter hypermethylation in nasopharyngeal carcinoma

 

Primer sequence

Product size

Bisulfite sequencing

  

Region1 Forward

5'-TAGTTTTTTGTTTAAAGGGTTTTAACGGGT-3'

365 bp

Region1 Reverse

5'- ACCTAAACTTAATAACTCCCCCTCA -3'

 

Region2 Forward

5'- ATTTTGGTATATTTTTGGGGAGTTT-3'

360 bp

Region2 Reverse

5'- CCCAAACACAAAATCTCATTTCTA -3'

 

Methylation specific PCR

  

Methylated Forward

5'-ATTTTTCGTCGGGAGTGGTC-3'

79 bp

Methylated Reverse

5'-GCAACGAATACGACGAACCT-3'

 

Unmethylated Forward

5'-GGGAGTGGTTGTGTGGTTTT-3'

103 bp

Unmethylated Reverse

5'-AACTTGGGGACACCCAAA-3'

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