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Table 1 The datasets retrieved from GEO and ArrayExpress

From: Meta-analysis of archived DNA microarrays identifies genes regulated by hypoxia and involved in a metastatic phenotype in cancer cells

Data set accession numbers

GeneChip models

Databases

Availability

Experimental conditions

E-GEOD-1323

HG-U133A

AE

Available

3 human colorectal cancer derived from a primary tumor VS. 3 corresponding lymph node metastases

E-GEOD-2280

HG-U133A

AE

Available

8 squamous cell carcinoma of the oral cavity VS. 19 corresponding lymph node metastases

E-MEXP-44

HG-U95Av2

AE

Available

15 head and neck squamous cell carcinoma VS. 3 corresponding lymph node metastases

 

HG-UgeneFL

AE

Available

12 head and neck squamous cell carcinoma VS. 11 corresponding lymph node metastases

GSE1056

HG-U95Av2

GEO

Not available

2 human hepatocellular carcinoma under hypoxia for 2 hours VS. 2 control human hepatocellular carcinoma

 

HG-U95Av2

GEO

Not available

2 human hepatocellular carcinoma under hypoxia for 24 hours VS. 2 control human hepatocellular carcinoma

GSE2280

HG-U133A

GEO

Available

22 squamous cell carcinoma of the oral cavity VS. 5 corresponding lymph node metastases

GSE2603

HG-U133A

GEO

Available

100 primary breast cancer VS. 21 lung metastases

GSE3325

HG-U133Plus2.0

GEO

Available

7 primary prostate cancer VS. 6 metastases

GSE4086

HG-U133Plus2.0

GEO

Available

2 human Burkitt's lymphoma under hypoxia VS. 2 control human Burkitt's lymphoma

GSE468

HC-G110

GEO

Available

13 primary medulloblastomas VS. 10 metastatic medulloblastomas

GSE4840

HG-U133A

GEO

Not available

3 samples from normal melanocyte culture VS. 12 samples from culture of cutaneous metastasis of melanoma

 

HG-U133B

GEO

Not available

3 samples from normal melanocyte culture VS. 12 samples from culture of cutaneous metastasis of melanoma

GSE4843

HG-U133Plus2.0

GEO

Not available

45 samples from culture of cutaneous melanoma metastasis

GSE6369

HG-U133Plus2.0

GEO

Available

1 primary prostate carcinoma VS. 1 metastatic prostate carcinoma

GSE6919

HG-U95Av2

GEO

Available

65 primary prostate tumors VS. 25 metastatic prostate tumors

 

HG-U95B

GEO

Available

66 primary prostate tumors VS. 25 metastatic prostate tumors

 

HG-U95C

GEO

Available

65 primary prostate tumors VS. 25 metastatic prostate tumors

GSE7929

HG-U133A

GEO

Available

11 poorly metastatic melanoma VS. 21 highly metastatic melanoma

GSE7930

HG-U133A

GEO

Available

3 poorly metastatic prostate tumors VS. 3 highly metastatic prostate tumors

GSE7956

HG-U133A

GEO

Available

10 poorly metastatic melanoma VS. 29 highly metastatic melanoma

GSE8401

HG-U133A

GEO

Available

31 primary melanoma VS. 52 melanoma metastasis

  1. The GEO or ArrayExpress accession numbers with the corresponding GeneChip model and the experimental conditions.