Enhanced NFκB and AP-1 transcriptional activity associated with antiestrogen resistant breast cancer
© Zhou et al; licensee BioMed Central Ltd. 2007
Received: 20 November 2006
Accepted: 03 April 2007
Published: 03 April 2007
Signaling pathways that converge on two different transcription factor complexes, NFκB and AP-1, have been identified in estrogen receptor (ER)-positive breast cancers resistant to the antiestrogen, tamoxifen.
Two cell line models of tamoxifen-resistant ER-positive breast cancer, MCF7/HER2 and BT474, showing increased AP-1 and NFκB DNA-binding and transcriptional activities, were studied to compare tamoxifen effects on NFκB and AP-1 regulated reporter genes relative to tamoxifen-sensitive MCF7 cells. The model cell lines were treated with the IKK inhibitor parthenolide (PA) or the proteasome inhibitor bortezomib (PS341), alone and in combination with tamoxifen. Expression microarray data available from 54 UCSF node-negative ER-positive breast cancer cases with known clinical outcome were used to search for potential genes signifying upregulated NFκB and AP-1 transcriptional activity in association with tamoxifen resistance. The association of these genes with patient outcome was further evaluated using node-negative ER-positive breast cancer cases identified from three other published data sets (Rotterdam, n = 209; Amsterdam, n = 68; Basel, n = 108), each having different patient age and adjuvant tamoxifen treatment characteristics.
Doses of parthenolide and bortezomib capable of sensitizing the two endocrine resistant breast cancer models to tamoxifen were capable of suppressing NFκB and AP-1 regulated gene expression in combination with tamoxifen and also increased ER recruitment of the transcriptional co-repressor, NCoR. Transcript profiles from the UCSF breast cancer cases revealed three NFκB and AP-1 upregulated genes – cyclin D1, uPA and VEGF – capable of dichotomizing node-negative ER-positive cases into early and late relapsing subsets despite adjuvant tamoxfien therapy and most prognostic for younger age cases. Across the four independent sets of node-negative ER-positive breast cancer cases (UCSF, Rotterdam, Amsterdam, Basel), high expression of all three NFκB and AP-1 upregulated genes was associated with earliest metastatic relapse.
Altogether, these findings implicate increased NFκB and AP-1 transcriptional responses with tamoxifen resistant breast cancer and early metastatic relapse, especially in younger patients. These findings also suggest that agents capable of preventing NFκB and AP-1 gene activation may prove useful in restoring the endocrine responsiveness of such high-risk ER-positive breast cancers.
Intracellular responses of ER-positive breast cancers to selective estrogen receptor modulators (SERMs) like tamoxifen are dependent on two different ER-regulated gene mechanisms: one in which liganded ER binds promoter DNA at an estrogen responsive element (ERE), and another in which ER becomes tethered to other promoter-bound transcription factors [1, 2]. Nuclear receptors like ER also produce their promoter-regulating effects via ligand-dependent recruitment of co-regulatory factors known as coactivators or corepressors [3–5].
Exhibiting a diverse array of chromatin-modifying activities, coactivators (e.g. SRC1, AIB1/SRC-3, TIF2, CBP/p300, PCAF) mediate the transcription promoting activity of liganded ER whether it is ERE bound or tethered to another promoter-bound complex like AP-1, NFκB, Sp1 or C/EBPβ. Alternatively, the transactivating potential of ER may be repressed by recruitment of a transcriptional corepressor (e.g. NCoR1, SMRT, REA, RIP140) with its associated histone deacetylase activity. The intracellular balance of coactivator-corepressor activity appears to determine, at least in part, whether the net cellular response to tamoxifen-bound ER is agonistic or antagonistic. Much of the antagonistic ER response to tamoxifen is mediated by NCoR1 ; and reduced NCoR1 expression in ER-positive primary breast cancers predicts for tamoxifen resistance and early metastatic relapse . However, in several tamoxifen-resistant ER-positive breast cancer models, including those induced by activated ERBB2, a chemical perturbation in the ER DNA-binding domain can reverse tamoxifen resistance by decreasing ER association with AIB1 and increasing its association with NCoR1, without altering cellular expression levels of these two ER co-regulators .
Less well appreciated are the intracellular consequences of tamoxifen-liganded ER in association with elevated AP-1 and NFκB transcriptional activities. ER and NFκB are known to be mutually inhibitory at several levels ; and it has been suggested that in some ER-positive breast cancers SERMS like tamoxifen can activate NFκB, stimulate cell growth and survival, and thereby contribute to endocrine resistance . Recent clinical evidence suggests that increased NFκB activation, in concert with activated AP-1, identifies a high-risk subset of hormone-dependent breast cancers destined for early relapse on adjuvant tamoxifen therapy . Unlike its interference with NFκB, ER can be recruited by DNA-bound heterodimers from the AP-1 family of b-zip transcription factors; and, dependent on tissue type and balance of nuclear co-regulators, tamoxifen-bound ER that is antagonistic on an ERE-driven gene promoter may be agonistic on an AP-1 driven gene promoter [12–15]. In ER-positive MCF7 cells, upregulated AP-1 activity has been associated with antiestrogen resistance ; and in clinical samples of ER-positive breast cancers, tamoxifen resistance has been associated with upregulated AP-1 activity .
To model the impact of tamoxifen-liganded ER on NFκB and AP-1 regulated genes, luciferase reporter genes driven by ERE, NFκB or AP-1 were transfected into ER-positive human breast cancer cells shown to possess basal (MCF7) or activated (MCF7/HER2, BT474) NFκB and AP-1 transcriptional activities. NFκB and AP-1 inhibiting doses of parthenolide or bortezomib/PS341, capable of enhancing tamoxifen inhibition of MCF7/HER2 and BT474 growth, were shown to increase recruitment of NCoR1 by endogenous ER in these cells and, relative to MCF7 cells, enhance the antagonistic and inhibitory effects of tamoxifen on both NFκB and AP-1 reporter genes. Finally, to explore the potential of linking genes upregulated by both NFκB and AP-1 with tamoxifen resistance, expression microarray data available from 54 node-negative ER-positive breast cancers revealed three such genes capable of dichotomizing these cases into early and late relapsing subsets despite adjuvant tamoxifen therapy: cyclin D1, uPA and VEGF. The prognostic association of these genes with patient outcome was further evaluated using node-negative ER-positive breast cancer cases identified from three other published data sets (Rotterdam, n = 209; Amsterdam, n = 68; Basel, n = 108), each having different patient age and adjuvant tamoxifen treatment characteristics.
Reagents, breast cancer cell lines, and drug response interactions
Unless otherwise specified, all reagents were purchased from Sigma Chemical Co. (St. Louis, MO), including tamoxifen (TAM; [Z]-1- [p-dimethylaminoethoxyphenyl]-1,2-diphenyl -1 butene). Parthenolide (PA) was purchased from Alexis Biochemicals (San Diego, CA); and bortezomib (PS341) was kindly provided by Millennium Pharmaceuticals Inc. (Cambridge, MA). The ER-positive/ERBB2-negative MCF7 and ER-positive/ERBB2-positive BT474 human breast cancer cell lines were obtained from the American Type Culture Collection (Rockville, MD) and were maintained at 37°C and 5% CO2 in Dulbecco's modified Eagle's medium (DMEM) for MCF7 or RPMI-1640 medium for BT474, supplemented with 10% fetal bovine serum (FBS), 1% penicillin-streptomycin, and 10 ng/ml insulin. Media and supplements were purchased from Mediatech, Inc. (Herndon, VA). The ER-positive/ERBB2-positive subline, MCF7/HER2 (clone-18), was maintained like parental MCF7 cells except for selection under G418 as originally reported . Data from previously reported experiments were re-analyzed to determine TAM-PA and TAM-PS341 treatment interactions [11, 19]. Relative to vehicle (DMSO or ethanol) treated controls, single agent and combined treatments (at indicated dose and duration) were assessed after plating 104 cells (MCF7, MCF7/HER2, BT474) in 24-well microtiter dishes by sulforhodamine B (SRB) viability assay. Expected (E) degrees of growth inhibition following TAM-PA or TAM-PS341 treatment combinations were determined based on independent probabilities of proportional growth reduction, and these were compared with observed (O) degrees of growth reduction (control = 1.0 or 100%). Following replicate testing (three independent experiments in quadruplicate), mean ± SEM O/E values were calculated and the significance (p-values) for O/E reductions in MCF7/HER2 or BT474 relative to MCF7 cells were determined by ANOVA and t testing.
Immunoprecipitation, immunoblotting and DNA-binding assays
Whole cell lysates were used for immunoprecipitation and immunoblotting. Cells were extracted in NP-40 buffer containing 50 mM Hepes (pH 7.4), 150 mM NaCl, 1% Nonidet P-40, 25 μM β-glycerol phosphate, 25 mM sodium fluoride, 5 mM EGTA, 1 mM EDTA, 1 mM sodium vanadate, and a cocktail of mini-complete protease inhibitors (Roche Diagnostics, Mannheim, Germany). Protein aliquots of 15–30 μg were separated by gel electrophoresis in 4–12 % Bis-Tris SDS gradient gels in morpholinepropane sulfonic acid (MOPS) running buffer. Proteins transferred onto polyvinylidene difluoride (PVDF) membranes were first blocked (5% non-fat milk in PBS containing 0.1% Tween-20) and then incubated overnight with antibodies specific to ERα, p50, p65, or bcl-3 (Santa Cruz Biotechnology Inc., Santa Cruz, CA). Immunoreactive bands were visualized with horseradish peroxidase-conjugated goat-anti-mouse IgG (BioRad, Hercules, CA) and chemiluminescence enhancement reagents (Pierce, Rockford, IL). Membranes were then stripped and reblotted with β-actin antibody (Abcam Inc., Cambridge, MA) to normalize for protein loading. For immunoprecipitation (IP) followed by Western blotting (WB), 300 μg protein aliquots were first incubated with 10 μl of p50 or NCoR antibody solution (Santa Cruz Biotechnology Inc., Santa Cruz, CA) for 2 hours (4°C) under continuous agitation. Immune complexes were recovered by adding 25 μl of Protein A-Sepharose beads (Amersham Biosciences, Uppsala, Sweden), washing × 5 in lysis buffer, and resuspending in 3 × Laemmli sample buffer prior to gel electrophoresis and immunoblotting, as described above.
Transient transfection and luciferase reporter assays
Cultures were seeded one day before transfection with luciferase (luc) reporters to a density of 1–2 × 103 cells per well in 96-well microtiter plates and using appropriate growth media. Cells were transiently transfected with either 0.5 μg of (ERE)3-tk-luc reporter plasmid (Promega, Madison, MI) or 0.5 μg of (NFκB)-luc or (AP-1)-luc reporter plasmid (Stratagene, La Jolla, CA), along with FuGene 6 transfection reagent (Roche, Indianapolis, IN). The Renilla luciferase vector pRL-tk-luc (Promega, Madison, MI) was co-transfected to normalize for transfection efficiency. Culture media was changed 20 h following transfection and cells were then treated with PS341 (10 nM, 25 nM) or PA (1 μM, 5 μM), alone or in combination with 500 nM TAM for 24 h. Cells were subsequently washed with PBS, lysed for Dual-Glo™ luciferase assay (Promega), and reporter activity measured by luminometer. The ratio of firefly luminescence/Renilla luminescence was used for comparison of AP-1 and NFκB driven gene activities in the untreated cell lines. All other transfections were reported as fold-changes in luciferase activity over vehicle treated controls. All transient transfection and reporter gene results are presented as mean values (± SEM) from at least three independent experiments using quadruplicate conditions. MCF7/HER2 and BT474 results showing significant differences (p < 0.05) from comparably treated MCF7 controls were determined by one-way ANOVA and t testing.
Breast cancer datasets and genes upregulated by NFκB and AP-1
Cryobanked breast cancer specimens were obtained from the University of California San Francisco (UCSF) Comprehensive Cancer Center Breast Oncology Program Tissue Core, and collected under UCSF approved protocols following patient consent. From an archive of over 1,000 liquid nitrogen frozen breast cancer specimens, 54 primary breast cancer samples (UCSF cases) had been identified for other study purposes , using the following criteria: early clinical stage (T1/2, N0, M0) invasive breast cancer, ER-positive status (>10% nuclear immunohistochemical staining), known primary systemic therapy (treatment era: 1989–2004, with 33/54 receiving adjuvant tamoxifen and 18/54 receiving adjuvant chemotherapy), known clinical outcome (relapse-free survival, RFS), and stratification into young (≤ 45 years, n = 29) or old (≥ 70 years, n = 25) age-at-diagnosis. The age stratification groups were balanced for standard prognostic markers (tumor size, grade, proliferation index, ERBB2 status) and adjuvant therapy, but showed differences in clinical outcome with the younger cases experiencing more frequent (7/29) and earlier metastatic relapses (median RFS = 4.84 years, range 0.13–14.14 years) than the older age-at-diagnosis cases (2/25; median RFS = 5.52 years, range 0.74–12.72 years). Sample requirements also included a minimum frozen-wet weight of 100 mg and histologic confirmation of >50% cancer cells per sample section. Total RNA from each tissue sample was formamide extracted, purified and reconstituted in aqueous solution using RNeasy (Qiagen, CA) according to manufacturer's instructions; and the resulting RNA samples were quality verified by micro-analysis (Agilent Bioanalyzer, CA). Total RNA (3–5 μg per sample) was labeled and analyzed using Affymetrix (Santa Clara, CA) high-density oligonucleotide microarrays, HG-U133A (v2), in 96-well chips each with 22.2 K annotated probes representing ~13 K unique Unigenes. Gene expression analysis was performed using standard Affymetrix procedures within the Lawrence Berkeley National Lab and Life Science Division's Molecular Profiling Laboratory (MPL). Probe set measurements were generated from quantified Affymetrix image files (.CEL files) using the RMA algorithm from BioConductor R. The resulting data matrix consisted of normalized log abundance values for each probe set and sample; these data files and associated clinical parameters for each sample have been entered into the NCBI Gene Expression Omnibus (GEO) repository (GSE7378). Gene expression values were mean centered, and a low variation filter was applied to exclude probe sets that did not have at least 5 observations exhibiting a two-fold change from the mean. While arbitrary, this filter restriction was based on accepted criteria . Filtered probes were annotated by GeneTraffic software (MPL) and those with unknown Unigene identity were omitted, yielding a final significant set of 5,523 probes representing 4,332 unique genes. This significant probe set was searched for genes reported to be coordinately upregulated by both NFκB and AP-1 [22–26]. To dichotomize the 54 tumor samples according to levels of expression for each of the NFκB and AP-1 upregulated genes identified in the significant probe set, samples with positive mean-centered transcript values were designated as "high" expressors while those with negative mean-centered values were classified as "low" expressors. Kaplan-Meier RFS curves were produced for each of the high/low dichotomizations, and Log Rank analysis was used to determine statistical significance between survival curves (StatView, SAS Institute Inc).
Three other independent data sets were used to evaluate the prognostic value of the NFκB and AP-1 upregulated genes identified from the UCSF dataset. Node-negative ER-positive breast cancer cases were identified from published Amsterdam (n = 68), Rotterdam (n = 209) and Basel (n = 108) gene expression studies, each consisting of cases with different age and adjuvant tamoxifen treatment characteristics (21, 27, 28). The Amsterdam dataset was obtained through the Rosetta Inpharmatics publications archive and consisted of breast cancers diagnosed in younger age (< 55 years) patients, of which 95% received no adjuvant therapy ; corresponding gene probes were identified by UniGene symbols. The Rotterdam dataset was obtained through the NCBI/Genbank GEO database (GSE2034) and consisted of breast cancers diagnosed in patients with ages ranging from 26–83 years, none of whom received any adjuvant therapy ; corresponding gene probes were identified by Affymetrix identification numbers, and when a gene was represented by multiple probes, the average expression value was calculated. The node-negative ER-positive Basel dataset was extracted from a previously reported study population, and consisted of breast cancers diagnosed in patients with ages ranging from 37–84 years, the majority of whom (70%) received adjuvant tamoxifen therapy . For the Amsterdam dataset, gene expression levels were determined using an Agilent microarray platform; positive log10(ratio) values were designated as "high" expressors, while those with negative log10(ratio) values were designated as "low" expressors. For the Rotterdam dataset, gene expression levels were determined using an Affymetrix microarray platform; positive mean centered values were designated as "high" expressors and negative mean centered values were designated as "low" expressors. For the Basel dataset, a median cut-point was applied to the quantitative real-time PCR data to dichotomize the samples into "high" vs. "low" expressors. Kaplan-Meier metastasis free survival curves were produced for each of the high/low dichotomizations, and Log Rank analysis was used to determine statistical significance between survival curves.
Tamoxifen resistant breast cancer models show enhanced NFκB and AP-1 transcriptional activity
Enhanced tamoxifen responsiveness associated with suppression of NFκB and AP-1 regulated gene expression
Treatment interactions between TAM-PS341 and TAM-PA in ER-positive breast cancer models.
TAM (500 nM)
% of control:
TAM (500 nM)
% of control:
Enhanced tamoxifen responsiveness associated with ER recruitment of the co-repressor, NCoR
Analysis of ER-positive primary breast cancers for NFκB and AP-1 upregulated genes
Given the fact that our TAM-resistant breast cancer models, MCF7/HER2 and BT474, showed activation of both NFκB and AP-1 transcription factor complexes by both DNA-binding and reporter gene assays, we performed an exploratory analysis in a UCSF dataset of 54 ER-positive, node-negative primary human breast cancers looking for prognostic genes known to be upregulated by activated NFκB and AP-1. Using a commercial expression microarray platform and standard filtering criteria, 4,332 unique genes were found to be variably expressed within this set of histologically similar, early-stage ER-positive breast cancers. Interestingly, the transcript levels for many NFκB constituents, including p50/NFKB1, p60, p65/RelA, RelB, and NFKB1A/IKBα did not pass a commonly used low variation expression threshold. Only one NFκB related probe (c-Rel) showed sufficient expression variation to be included in the significant probe set. In contrast, six AP-1 components passed the low variation expression filter, including c-Jun, JunB, JunD, c-Fos, FosB, and Fra2. Except for JunD, none of these variably expressed NFκB or AP-1 components showed any significant association with patient outcome. Among NFκB and AP-1 regulated genes showing sufficient expression variation were three probes for VEGF, two probes each for uPA and cyclin D1, and one probe each for MMP9, CCL2, ICAM1, AGT and BF. Several other well known NFκB regulated genes (e.g. COX2, TNF, LTA, CSF2, CSF3, IFNB1, IFNG, IL-6, IL-8) failed to pass the low variation filtering criteria for admission into the significant probe set expressed by these early-stage ER-positive breast cancers.
A number of gene signature studies have now demonstrated that ER-positive breast cancers can be subset into those associated with good patient prognosis and those at higher risk for metastatic relapse despite adjuvant endocrine therapy [32, 34–36]. Other preclinical and clinical evidence links TAM-resistant ER-positive breast cancer with co-expression of one or more members of the ERBB/HER family of membrane receptor tyrosine kinesis [32, 33, 37–40], activation of insulin-like growth factor receptors , and/or constitutively active downstream signal transduction pathways (e.g. Ras/Raf, PKC, MAPK, PI3K/AKT/mTOR) capable of crosstalking with ER [38, 42–45]. These ER interfering signals all converge on two transcription factor complexes, AP-1 and NFκB, also found activated in high-risk subsets of ER-positive breast cancer relapsing early on TAM therapy [17, 19]. A recent analysis of 59 early stage ER-positive breast cancers, diagnosed across all age groups and treated with adjuvant TAM, identified increases in both NFκB (p50) and AP-1 DNA-binding as co-predictors of early metastatic relapse . Cross correlation of these two parameters with numerous other protein biomarkers formerly evaluated in the same tumor set also identified a strong association with uPA expression , an established prognostic marker for node-negative breast cancer  transcriptionally controlled by the cooperative transactivation of both NFκB and AP-1 . Thus, this study introduced the possibility that ER-positive breast cancers at risk for antiestrogen resistance and early metastatic relapse might be identified at diagnosis by elevated expression of genes transcriptionally upregulated by NFκB and AP-1. Still to be defined, however, was the mechanistic rationale for a therapeutic intervention that could prevent the activation of NFκB and AP-1 and thereby restore antiestrogen sensitivity to such high-risk ER-positive breast cancers.
In the present study, two TAM-resistant ER-positive/ERBB2-positive breast cancer cell lines (MCF7/HER2 and BT474) and one TAM-sensitive ER-positive/ERBB2-negative breast cancer cell line (MCF7) were used to model the effects of TAM treatment on breast cancers with either low or high levels of NFκB and AP-1 transcriptional activity, and assess the TAM interacting effects of drugs (PA, PS341) potentially capable of lowering NFκB and AP-1 activities. These cell lines are considered relevant experimental models since TAM acts as a growth antagonist in MCF7 but shows little growth inhibiting activity against BT474 and can actually stimulate growth of MCF7/HER2 , similar to clinical observations with TAM treated ER-positive/ErbB2-positive breast cancers . While the TAM-resistance displayed by MCF7/HER2 and BT474 undoubtedly results from their constitutively activated ERBB2 signaling, the present studies demonstrated that these models exhibit significantly increased NFκB (Figure 1) and AP-1 (Figure 2) DNA-binding and gene upregulating activities. Unlike observations with MCF7 cells, TAM treatment failed to significantly suppress (ERE)-luc reporter gene activity in MCF7/HER2 and BT474 cells (Figure 3A), and produced only attenuated recruitment of the co-repressor NCoR to TAM-bound ER (Figure 4). Earlier studies comparing parental MCF7 with MCF7/HER2 had demonstrated that both cell lines express comparable levels of NCoR, and that TAM treatment of MCF7/HER2 fails to result in NCoR recruitment by ER but inhibition of ERBB2 signaling can restore ER-NCoR binding in MCF7/HER2 compareble to that seen in MCF7 cells .
Rather than inhibit upstream ERBB2 signaling, the present approach was designed to inhibit downstream NFκB and AP-1 activation in the TAM-resistant breast cancer models. PA and PS341, at doses capable of enhancing TAM induced growth inhibition of MCF7/HER2 and BT474 cells (Table 1), reduced NFκB and AP-1 driven gene expression (Figures 3B, C); and, in combination with a TAM dose that alone had no effect on these reporter genes, TAM-PA and TAM-PS341 combinations more substantially reduced NFκB and AP-1 driven gene expression but only in the TAM-resistant cells having constitutively elevated NFκB and AP-1 activity. These same TAM-PA and TAM-PS341 combinations were able to restore the levels of NCoR binding to TAM-liganded ER in the MCF7/HER2 and BT474 cells toward that observed in the TAM-sensitive MCF7 cells. A more general extrapolation of these results would suggest that direct inhibition of constitutively elevated NFκB and AP-1 transcriptional activities, caused by any number of oncogenic stimuli and signaling pathways, can improve the endocrine responsiveness of otherwise TAM-resistant ER-positive breast cancers by enhancing NCoR recruitment to TAM-liganded ER, thereby suppressing expression of growth and metastasis promoting genes upregulated by both NFκB and AP-1.
Looking for preliminary evidence of growth and metastasis promoting genes coordinately upregulated by both NFκB and AP-1, expression microarray data available from 54 UCSF node-negative ER-positive breast cancers with known clinical outcome revealed three such genes capable of dichotomizing these cases into early and late relapsing subsets despite adjuvant tamoxifen therapy: cyclin D1, uPA and VEGF (Figure 5). Not only are these gene candidates known to be transcriptionally upregulated by the coordinated activation of both NFκB and AP-1 [22–26], their overexpression has been linked to clinically aggressive forms of breast cancer and, in some cases, to tamoxifen resistance [28, 47, 48]. For unrelated study purposes , these ER-positive tumor samples had been preselected from two different age-at-onset breast cancer case populations (young, ≤ age 45; older, ≥ 70), but were otherwise indistinguishable with regard to standard prognostic markers and systemic adjuvant therapy including TAM. While overexpression of these three NFκB and AP-1 upregulated genes at the protein level has been well documented for clinically aggressive breast cancers, their prognostic impact at the transcript level had not been previously recognized for ER-positive breast cancer. Of interest, the prognostic value of these genes measured by separation in Kaplan-Meier RFS curves appeared greater for the younger age-at-onset cases, in which there were overall more metastatic relapses than for the older age-at-onset cases, despite the fact that both age groups showed similar median and range transcript values for each of the gene candidates. Since higher expression of more than one of these three genes might be expected given a common NFκB and AP-1 upregulating transcriptional mechanism, it is of interest that the 26 cases showing 2/3 (HHL) or 3/3 (HHH) of these upregulated genes showed significantly worse RFS outcomes than the 28 cases with fewer upregulated genes (HLL, LLL), and that the 10 early stage ER-positive breast cancers with all three upregulated genes had the poorest outcome with a median RFS of < 5 years.
The associations of cyclin D1, uPA and VEGF with patient outcome were tested in node-negative ER-positive breast cancer cases identified from three other independent datasets (21, 27, 28), each with different patient age and adjuvant tamoxifen treatment characteristics and none comparable to the younger age, tamoxifen-treated UCSF cases in which these three genes exhibited their greatest prognostic impact. Identified from these other datasets were 209 older age, tamoxifen-untreated Rotterdam cases, 68 younger age, tamoxifen-untreated Amsterdam cases, and 108 older age, tamoxifen-treated Basel cases. Consistent with the UCSF results, higher expression levels of these three NFκB and AP-1 upregulated genes in the other datasets were generally associated with worse outcomes, individually and collectively, although many of these differences did not quite reach statistical significance. It is important to note that no effort was made to optimize the high/low median value cut-points arbitrarily chosen for the UCSF outcome analysis and subsequently applied to the other datasets. Generalizing from all four datasets it might be suggested that as individual prognostic factors, VEGF appeared least dependent on age-at-diagnosis and adjuvant tamoxifen status, uPA appeared most useful in tamoxifen treated cases, and the impact of cyclin D1 appeared limited to younger cases. Evaluating the three NFκB and AP-1 upregulated genes collectively across all four datasets and weighting them equally demonstrated that node-negative ER-positive cases with high level expression of all three genes (HHH) experience the earliest metastatic relapses (median recurrence intervals ≤ 5 years).
While exploratory and preliminary in nature, these transcript expression results indicate that genes coordinately upregulated by NFκB and AP-1 may be implicated in the clinical behavior of ER-positive breast cancers resistant to tamoxifen and destined for early relapse. Since the transcriptional activities of NFκB and AP-1 complexes are not directly measurable in clinical breast cancer samples, prognostic signatures reflecting these activities would help to identify high-risk ER-positive breast cancers in need of more aggressive adjuvant therapy. Although cyclin D1, uPA and VEGF are known to be transcriptionally upregulated by NFκB and AP-1, the promoters of these three genes are also regulated by numerous other transcription factors which no doubt possess variable activities in otherwise similar ER-positive node-negative breast cancers, likely contributing to the variable prognostic impact of these genes observed across the four independent datasets. Based on the outcome associations demonstrated here for uPA, cyclin D1, and VEGF transcript levels as extracted from frozen breast cancer samples and quantitated by different assay platforms, future studies might consider validating this minimal gene signature set using RNA extracted from formalin-fixed and paraffin-embedded breast cancer samples, much like the recently approved OncoType DX® (Genomic Health) assay which employs a 21-gene signature set to identify ER-positive node-negative breast cancers in need of aggressive adjuvant therapy . As well, a validated gene signature set representing constitutively activated NFκB and AP-1 activity in ER-positive breast cancers might be used to identify patients who would be optimally treated with an antiestrogen in combination with an NFκB and AP-1 down-regulating drug [11, 50]. Such drugs might include a proteasome inhibitor (e.g. bortezomib, NPI-0052), an IKK inhibitor (e.g. BAY11-7085, BMS-345541, MLN-0415), or even phytochemicals like curcumin, resveratrol or epigallocatechin gallate. Based on the TAM-PA and TAM-PS341 combinations evaluated here, a TAM-sensitizing drug dose affecting a high-risk ER-positive breast cancer would be expected to restore ER-NCoR binding and could be monitored during therapy by tumor reduction in the validated NFκB and AP-1 gene expression signature.
The findings presented here implicate increased NFκB and AP-1 transcriptional responses in tamoxifen resistant ER-positive breast cancer models. A minimal set of transcripts reflecting NFκB and AP-1 upregulated genes may be able to identify node-negative ER-positive primary breast cancers at risk for early clinical relapse despite tamoxifen therapy. Agents capable of preventing NFκB and AP-1 gene activation may be able to improve the antiestrogen responsiveness of such high-risk ER-positive breast cancers.
We appreciate the considerable assistance of Heidi Feiler, PhD, Director of the Affymetrix HTArray Genomics Core in the Molecular Profiling Laboratory of the Lawrence Berkeley National Lab. Christina Yau participated in these studies in partial fulfillment of dissertation research within the Joint UCB-UCSF Bioengineering Graduate Program. These studies were supported in part by NIH grants R01-AG020521, R01-CA71468, R01-CA36773, P30-CA82103, and P50-CA58207, California Breast Cancer Research Program grant CBCRP-10YB-0125, and Hazel P. Munroe memorial funding to the Buck Institute.
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