Analysis of gene expression in prostate cancer epithelial and interstitial stromal cells using laser capture microdissection
- Jennifer L Gregg†1,
- Kathleen E Brown†2,
- Eric M Mintz1, 2,
- Helen Piontkivska1, 2 and
- Gail C Fraizer1, 2Email author
© Gregg et al; licensee BioMed Central Ltd. 2010
Received: 13 August 2009
Accepted: 28 April 2010
Published: 28 April 2010
The prostate gland represents a multifaceted system in which prostate epithelia and stroma have distinct physiological roles. To understand the interaction between stroma and glandular epithelia, it is essential to delineate the gene expression profiles of these two tissue types in prostate cancer. Most studies have compared tumor and normal samples by performing global expression analysis using a mixture of cell populations. This report presents the first study of prostate tumor tissue that examines patterns of differential expression between specific cell types using laser capture microdissection (LCM).
LCM was used to isolate distinct cell-type populations and identify their gene expression differences using oligonucleotide microarrays. Ten differentially expressed genes were then analyzed in paired tumor and non-neoplastic prostate tissues by quantitative real-time PCR. Expression patterns of the transcription factors, WT1 and EGR1, were further compared in established prostate cell lines. WT1 protein expression was also examined in prostate tissue microarrays using immunohistochemistry.
The two-step method of laser capture and microarray analysis identified nearly 500 genes whose expression levels were significantly different in prostate epithelial versus stromal tissues. Several genes expressed in epithelial cells (WT1, GATA2, and FGFR-3) were more highly expressed in neoplastic than in non-neoplastic tissues; conversely several genes expressed in stromal cells (CCL5, CXCL13, IGF-1, FGF-2, and IGFBP3) were more highly expressed in non-neoplastic than in neoplastic tissues. Notably, EGR1 was also differentially expressed between epithelial and stromal tissues. Expression of WT1 and EGR1 in cell lines was consistent with these patterns of differential expression. Importantly, WT1 protein expression was demonstrated in tumor tissues and was absent in normal and benign tissues.
The prostate represents a complex mix of cell types and there is a need to analyze distinct cell populations to better understand their potential interactions. In the present study, LCM and microarray analysis were used to identify novel gene expression patterns in prostate cell populations, including identification of WT1 expression in epithelial cells. The relevance of WT1 expression in prostate cancer was confirmed by analysis of tumor tissue and cell lines, suggesting a potential role for WT1 in prostate tumorigenesis.
Prostate cancer is the most common cancer in men, with over 186,000 people affected annually and a lifetime risk of 1:6 . Mechanisms of prostate cancer development and progression vary and are not well understood. With age, normal prostate epithelial structure often changes, resulting in benign or malignant consequences. Benign prostatic hyperplasia (BPH) is characterized by prostate enlargement due to proliferation of epithelia; cells preserve their normal characteristics and do not progress to malignancy. Alternatively, prostate epithelia may accumulate any number of genetic changes leading to carcinogenesis. Prostatic adenocarcinoma is characterized by invasion of the underlying stroma by malignant epithelial cells (reviewed in .). Prostate carcinoma can be classified according to the features of malignant acini; stage T2 tumors are confined within the prostate, while advanced stage T3 tumors spread into the adjacent tissue.
The prostate gland is composed primarily of epithelial and interstitial stromal cells. Communication between these cell types is important not only for normal development, but also for prostate tumorigenesis . Prostate epithelial cells are primarily luminal but include a mixture of basal and neuroendocrine cell types [4, 5]. The surrounding adjacent stromal cells, which are a mixture of fibroblasts, smooth muscle, endothelial, nerve, and inflammatory cells [4, 6, 7], influence the growth and development of prostate cancer epithelial cells and affect androgen responsiveness . Typically, studies have utilized surgically dissected samples that included mixtures of cell types [9, 10]. As such...., microarray analyses comparing these "tumor" with "normal" samples are difficult to interpret, since gene expression in tumor epithelial cells was diluted by the inclusion of adjacent stromal cells in the analysis, leading to ambiguous results. Thus, a true assessment of differential gene expression in tumor tissue requires cell-specific comparisons.
The identification of distinct gene expression patterns in tumor epithelia and adjacent stroma can help elucidate cell communication pathways that are active in prostate cancer. Previous studies using laser capture microdissection (LCM) have examined differential gene expression between stromal samples, either prostate stroma relative to bladder stroma  or reactive tumor stroma relative to normal stroma . Other studies have enriched tumor epithelial cell populations using LCM, but have made comparisons between different Gleason grades  or between different treatments . Additional studies have utilized different tissue sources (such as formalin fixed paraffin embedded tissue [15–17] or frozen biopsies ) or tested different platforms (such as cDNA arrays ). There was also one report comparing expression in untreated prostate tumor stroma compared to tumor epithelia ; however the 5 microdissected tissues samples were pooled precluding statistical analysis. Thus, although several studies have addressed differences in gene expression between various epithelial or stromal populations, currently very little is known about differences between stroma and epithelia.
Given the need to identify specific gene expression patterns in both tumor epithelial and adjacent stromal cells, we chose to isolate cells of these tissue types using laser-capture microdissection (LCM). While this study analyzed differences in gene expression between microdissected tumor epithelial cells and adjacent stromal cells within the neoplastic prostate, a major focus of this study was to identify genes whose expression was enriched in stromal compared to epithelial cells. Another aim was to determine whether some of the genes previously described as "expressed in prostate cancer" were actually expressed to a greater extent in stromal tissues than in epithelial. Microdissection of specific cells within the prostate tumor and subsequent microarray analysis more accurately identified expression of major genes in prostate cancer whose expression was limited to specific cell populations. Growth factor signaling and transcription factor regulatory genes were two gene categories identified by this microarray analysis. Additionally this approach identified differential expression of the transcription factor, WT1, in prostate cancer epithelial cells and lead to subsequent characterization of its expression in cell lines and in paired non-neoplastic and tumor frozen biopsies.
All tissues were acquired and used with IRB approval from Kent State University and the appropriate institutions (see below). Frozen tissues in optimal cutting temperature media (OCT) were obtained for RNA isolation while formalin fixed paraffin embedded (FFPE) tissues were obtained for immunohistochemistry. Two types of OCT embedded tissues were obtained: 1) 5 micron sections for laser capture microscopy (LCM) and 2) OCT blocks for quantitative real-time PCR (QRT-PCR).
The serial frozen tissue sections for LCM were provided by The Ohio State University Prostate Cancer tissue Bank, part of the Human Tissue Resource Network (HTRN) in the Department of Pathology (Columbus, Ohio). The tumor samples were removed during radical prostatectomy and frozen in OCT. Tumors were categorized as intermediate grade (primarily Gleason grade 3). Two of three samples had a combined Gleason score of 6 and one had a GS 7. One of the serial sections from each tumor was stained with hematoxylin and eosin and the tumor areas marked for identification. Stromal tissue of all 3 samples appeared to contain a similar proportion of inflammatory cells.
For QRTPCR analysis twenty paired prostate tissues were provided by Dr. C. Magi-Galluzzi (Cleveland Clinic Foundation, Cleveland, OH). Tissues were obtained by radical prostatectomy, paired tumor and non-neoplastic tissues were selected from each prostate and frozen in OCT. All tumor samples were of T2 or T3 stage with combined Gleason score of 7 and were observed to have abundant epithelial tissue for RNA isolation.
Commercially available prostate tissue microarrays (TMAs) were purchased from Creative Biolabs (Fort Jefferson Station, NY). Tissue arrays consisted of cores of formalin-fixed, paraffin embedded prostatectomy cores in duplicate or triplicate from each prostate. Cores were arrayed in a rectangular fashion and were 1.0-1.5 mm in diameter and 5 μm in thickness. A total of 31 cases of carcinoma, 7 of benign hyperplasia, and 5 normal (non-neoplastic) controls were examined. Normal samples were obtained from cancer-free prostates from normal individuals. All tissues were selected and evaluated by an independent pathologist who determined Gleason grading and differentiation status. Nearly half of the cores were from high grade tumors with Gleason scores 8-10.
Non-neoplastic RWPE-1 cells were obtained from the American Type Culture Collection (Manassas, VA) and grown in K - SFM supplemented with 0.05 mg/mL bovine pituitary extract and 5 ng/mL EGF. Hormone responsive LNCaP tumor cells were grown in RPMI-1640 media supplemented with 10% FCS and antibiotics. Hormone insensitive LNCaP - C42, PC3, and DU145 tumor cells were grown in DME - F12 media supplemented with 10% FCS and antibiotics. All cells were maintained in 5% CO2 at 37°C.
Laser Capture Microdissection
For LCM, the frozen sections were stained and dehydrated using the HistoGene LCM Frozen section staining kit as per manufacturer's recommendations. Cell capture and lysis was completed within 2 hours to assure quality RNA. The epithelial and interstitial stromal cells were isolated from ten slides containing 5 micron frozen tissue sections using an LCM microscope (Arcturus Bioscience, Mt View, CA). Neoplastic areas of the slide observed to have the most abundant cells of interest were identified and marked to direct the laser capture. Stromal cells were collected from areas adjacent to glandular epithelium and included inflammatory cells. Overall, 1000 to 2000 epithelial or stromal cells were captured per cap. To verify the accuracy of capture, tissue sections and caps were examined post-capture.
RNA Isolation and Quantification
Cells captured by LCM
Captured cells were lysed and RNA extracted as per manufacturer's recommendations (Arcturus Bioscience, Mt View, CA). Briefly, cells were incubated for 30 minutes at 42°C in Pico Pure extraction buffer. RNA purification columns were washed and treated with DNase (Qiagen Sciences, San Diego, CA). The RNA was eluted in Elution Buffer, and RNA quantity and quality were checked using the RNA Pico-Chip on the Bioanalyzer 2100 (Agilent Bioscience, Mt View, CA). RNA was amplified using the RiboAmp HS kit (Arcturus Bioscience, Mt View, CA).
Frozen Prostate Tissues
Frozen paired prostate tissues were removed from OCT media and RNA isolated using the RNEasy Mini Kit per the manufacturer's recommendations (Qiagen, San Diego, CA). Briefly, tissues were homogenized by sonication. RNA was purified by several washes in the RNEasy mini column and eluted with water. RNA quantity and quality was measured with RNA MicroChips using the Bioanalyzer 2100 per the manufacturer's recommendations (Agilent Bioscience, Mt View, CA).
RWPE-1, LNCaP, LNCaP-C42, PC3, and DU145 cells were grown to confluency under standard culture conditions. Cells were rinsed twice in PBS and harvested per the manufacturer's recommendations (Qiagen, San Diego, CA). RNA quantity and quality was measured as described above.
Labeling and Oligonucleotide Microarray Hybridization
Biotin-labeled cRNA was hybridized to Affymetrix Human Genome U133A 2.0 chips (HG_U133A 2.0) for 16-hour at 45°C. The GeneChip® Operating Software (GCOS) was used to run the Fluidics Station 400 and hybridized arrays were stained with the Midi_euk2v3 labeling kit for detection. The arrays were scanned using an Affymetrix® GeneChip® Scanner 3000. The signal intensities were normalized by Affymetrix software to the spike-controls located on the array chip. After chip normalizations, relative intensities were used to determine whether expression is absent (A), present (P), or marginal (M). Expression patterns between arrays were compared and raw signal strength was examined to verify that hybridization was effective.
Signal intensities for each gene were generated using the Microarray Suite 5.0 algorithm by Affymetrix GCOS software 1.1. In addition to the signal intensity, each gene was determined to be present, marginal, or absent using default software settings. Overlap in gene expression between epithelial and stromal cell samples was assessed by counting the number of probe sets with all three samples showing present calls. For analysis of differential expression between epithelial and stromal cell samples, a filter requiring a present call in at least 3 of the 6 arrays was applied. This reduced the total number of probe sets to be analyzed from 22,215 to 8,739. Signal intensities for the three epithelial and three stromal arrays were further analyzed using Cyber-T software http://cybert.microarray.ics.uci.edu/ using the default settings. This software generates p-values for each gene as a test of differences between groups using a Bayesian paired t-test . A list of candidate differentially expressed genes was generated using genes with a posterior probability of differential expression  of 0.99 or higher, which corresponded roughly to a Bayes p-value of 0.001 or less.
Functional Gene Ontology (GO) annotation of genes of interest was performed using DAVID http://david.abcc.ncifcrf.gov/[23, 24] and Affymetrix databases. Gene functional classification and functional annotation clustering were performed to identify functional gene groups and ontology terms that are significantly overrepresented among genes of interest.
Quantitative Real-Time PCR
Quantitative real-time PCR primer sets obtained for expression analyses (Applied Biosystems).
ABI Assay IDa
Zinc finger transcription factors
Growth factor signaling
Immunohistochemistry (IHC) and Scoring of TMAs
Immunohistochemical staining of the prostate TMAs was performed using standard IHC techniques. Briefly, slides were deparaffinized using a sequential method of rehydration followed by antigen retrieval in citrate solution with heating. Endogenous peroxidase activity was blocked with a 3% hydrogen peroxide solution. Slides were probed with a rabbit polyclonal anti-WT1 antibody (Epitomics, Burlingame, CA). Staining was visualized using a biotinylated goat anti-rabbit IgG secondary antibody, streptavidin horseradish peroxidase solution, and DAB (Vector Laboratories, Burlingame, CA). Slides were counterstained with hematoxylin, mounted and examined by brightfield microscopy. Staining was visualized using an Olympus IX70 microscrope at 100× total magnification. Images were taken with a Diagnostic Instruments camera and analyzed using SPOT Advanced software. Immunoreactivity assessment was based on intensity of staining in epithelial cells relative to any nonspecific stromal reactivity. Slides were scored blindly by two different individuals. Relative staining intensity was scored using a 3 point scaling system, where 0 represents the absence of staining in any epithelial cells, 1 represents weak to moderate staining, and 2 represents strong staining in at least 25% of epithelial cells.
Microarray analysis of laser captured cells
Genes Expressed significantly higher in epithelial cell samples
prostate epithelium-specific Ets transcription factor (SAM pointed domain-ets factor)
myosin-binding protein C, slow-type
FXYD domain containing ion transport regulator 3
NK3 transcription factor related, locus 1
fibroblast growth factor receptor 3
golgi phosphoprotein 2
adenosylmethionine decarboxylase 1
tumor-associated calcium signal transducer 1
N-myc downstream regulated gene 1
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7
kallikrein 3, (prostate specific antigen)
T-cell receptor (V-J-C) precursor
ATP-binding cassette, sub-family C (CFTR/MRP), member 4
kallikrein 2, prostatic
kallikrein 2, prostatic
kallikrein 3, (prostate specific antigen)
phosphoprotein regulated by mitogenic pathways
cut-like 2 (Drosophila)
T-cell receptor (V-J-C) precursor
retinol dehydrogenase 11
growth differentiation factor 15
chondroitin beta1,4 N-acetylgalactosaminyltransferase
T-cell receptor (V-J-C) precursor
tumor protein D52
Genes Expressed significantly higher in stromal cell samples
chemokine (C-X-C motif) ligand 13 (B-cell chemoattractant)
actin, gamma 2, smooth muscle, enteric
actin, alpha, cardiac muscle
chemokine (C-C motif) ligand 5
NEL-like 2 (chicken)
chemokine (C-C motif) ligand 5
RAB31, member RAS oncogene family
collagen, type XIV, alpha 1 (undulin)
aspartoacylase (aminoacylase 2, Canavan disease)
embryonal Fyn-associated substrate
D component of complement (adipsin)
major histocompatibility complex, class II, DQ beta 1
myosin, light polypeptide 9, regulatory
myosin, light polypeptide kinase
spondin 1, extracellular matrix protein
insulin-like growth factor 1
transcription factor 8
lectin, galactoside-binding, soluble, 1 (galectin 1)
src homology three (SH3) and cysteine rich domain
collagen, type VI, alpha 3
Purkinje cell protein 4
pleckstrin homology domain containing, family C (with FERM domain) member 1
heat shock 27 kDa protein 8
scrapie responsive protein 1
four and a half LIM domains 1
ryanodine receptor 2 (cardiac)
sorbin and SH3 domain containing 1
tropomyosin 2 (beta)
brain expressed, X-linked 1
endothelin receptor type A
Meis1, myeloid ecotropic viral integration site 1 homolog (mouse)
Functional classification clustering analysis: genes differentially expressed in prostate cancer epithelial and stromal cells
Gene functional classificationa
Number of genes (%)b
Enrichment scores range
I. Gene clusters upregulated in epithelial cells (40 clustered genes)c
ALCAM, AQP3, C1ORF115, C20ORF3, CLDN8, DPP4, FAM134A, FXYD3, GOLM1, GPR56, HPN, KLK2, KLK3, PTPRF, SLC19A1, SLC39A6, SLC7A1, SPINT2, SYNGR2, TACSTD1, TACSTD2, TM4SF1, TMED3, TMED9, TSPAN8, YIPF1
Ion transporters (including metal ion and ATP dependent transporters)
ABCC4, AQP3, ATP2C1, ATP2C2, ATP6V0E2, ATP8A1, CACNA1D, FXYD3, KCNN2, KCNN4, KCNS3, SLC39A6, SLC4A4, TRPV6
1.34 - 2.01
II. Gene clusters upregulated in stromal cells (86 clustered genes) c
Organ development and structural proteins
(including muscle genes)
COL14A1, COL16A1, COL17A1, COL1A2, COL3A1, COL4A1, COL4A2, COL4A3, COL4A6, COL6A3, SLK
ACTC1, ANGPT1, BMP5, CHRDL1, COL4A2, DES, FAM48A, MYH11, MYH6, SCRG1, SERPINF1, TPM1, TPM2
5.87 - 7.17
Structural and extracellular matrix proteins
CALM3 (3 loci, Entrez Gene IDs 801, 805, 808), CETN2, EFEMP1, EFEMP2, FBLN1, MATN2, NELL2, NID2, PLS3, S100A4
4.14 - 4.87
Group 6-7, 10.
immune and inflammation related proteins
BTN3A2, BTN3A3, C1S, C3, C7, CCR5, CDH10, CFD, CLU, CX3CR1, CXCR4, EDNRA, FZD7, HLA-DPA1, HLA-DQA2, HLA-DQB2, IL6ST, JAM3, LPHN1, MCAM, SERPING1, SGCG
1.9 - 3.47
zinc finger transcription factors
CSRP1, CSRP2, DZIP1, FHL1, LDB3, LMO3, MBNL1, MBNL2, PEG3, ZFP36L1
Groups 9, 11.
metal ion transporters and regulators
ARVC2, ATP1A2, C10ORF56, CHN1, FHM2, FXYD6, ITPR1, KCNAB1, KCNMA1, KIR6.1, MBLL, PDZRN4, SERCA2, SLC24A3, SP140L, STAC, TRPC4
1.56 - 2.06
Overall, we observed that many of the differentially expressed genes identified in the "Significantly Higher" lists (additional files 1 and 2) fall into two categories that are important for cell signaling: transcription factors and growth control. Of the transcription factors identified, we examined three within the zinc finger family, namely Wilms' Tumor 1 (WT1), GATA2, and early growth receptor protein 1 (EGR1). Of the growth control genes identified, we examined those known to be important in prostate tumorigenesis such as the chemokines CCL5 and CXCL13 and members of the insulin-like growth factor (IGF) and fibroblast growth factor (FGF) signaling pathways including IGF-1, IGF-IR, IGFBP3, FGF-2, and FGFR-3 [25–27]. Based on the microarray analysis, elevated expression of the zinc finger transcription factors (WT1, EGR1, and GATA2) and growth factor receptors (IGF-1R and FGF-R3) was observed in the epithelia, while expression of the chemokines (CCL5 and CXCL13) and growth factor ligands (IGF-1, FGF-2, and IGFBP3) was found in the stroma.
In order to more precisely quantify the expression of genes in the LCM-derived samples used in the oligonucleotide microarray, we analyzed the selected genes described above using quantitative real-time PCR and the 2-ddCt method . Due to limitations in the quantity of RNA obtained from the laser captured samples, expression of only seven of the ten genes examined was confirmed in at least two of the three samples, namely WT1, GATA2, CCL5, CXCL13, IGF-1, IGF-1R and FGF-2. Of those genes analyzed, fold difference values were at least 1.2-fold or greater relative to the paired cell type, i.e. epithelia relative to stroma, or vice versa (data not shown). Interestingly, elevated EGR1 expression was not confirmed by real-time analysis of epithelial cells.
Expression in paired tumor and non-neoplastic tissues, cell lines, and tissue microarrays
Quantitative real-time PCR analysis of zinc finger transcription factor expression in tumor tissue relative to non-neoplastic tissuea.
Using laser capture microdissection to isolate distinct cell-type populations from epithelial and stromal tissues in prostate cancer, our results identified nearly 500 genes whose expression was significantly different between epithelial and stromal cells. One important finding was the differential expression of WT1 in prostate cancer epithelia cells. This cell specific expression suggests a potential role for WT1 in prostate cancer. While there have been reports of WT1 expression in prostate [29, 31], our results demonstrate the most complete evidence of elevated WT1 expression at both mRNA and protein levels in prostate tumors. While Devilard et al.  demonstrated differential expression of WT1 by microarray analysis of the LuCaP cell line in a xenograft model, our study is the first to identify WT1 expression in microdissected human epithelial cells. We have confirmed the microarray results by real-time PCR and quantified WT1 expression in paired tissue samples and in established tumorigenic cell lines. In paired tumor and non-neoplastic tissue, WT1 expression was elevated in 70% of high-grade tumors examined. In three of four established prostate cancer cell lines, WT1 expression was also significantly higher than the non-neoplastic cell line RWPE-1. Further analysis of WT1 protein identified expression in 65% of tumor samples and, more importantly, the absence of expression in non-neoplastic and BPH samples.
This elevated WT1 expression provides evidence for a potential oncogenic role in prostate cancer. Although WT1 is expressed mainly in the urogenital system during development and in the central nervous system, bone marrow, lymph nodes, and gonads in adulthood [33, 34], many studies have shown elevated WT1 expression in diverse cancer types , including leukemia [35–37]., breast [29, 38, 39], ovarian , mesothelioma and pulmonary adenocarcinomas . Additionally, WT1 is being thoroughly investigated as a potential prognostic marker [35, 38, 41]. Structurally, WT1 belongs to the family of transcription factors with four Krüppel-like zinc fingers in the C-terminus that aid in nucleic acid binding. WT1 exists in multiple isoforms and its ability to regulate transcription is primarily determined by the presence or absence of three amino acids: lysine, threonine, and serine (KTS), encoded at the end of exon 9 . Functionally, WT1 has been shown to regulate genes important in prostate cancer including VEGF, Bcl2, AR, and IGF1R [43–46]. We have recently identified potential WT1 binding sites in the regulatory sequences of genes expressed in prostate cancer epithelial cells [47, 48]. Additionally, WT1 protein was identified bound to several of these gene promoters in native chromatin of transfected LNCaP cells. Therefore, an up-regulation of WT1 expression in prostate epithelial cells would be consistent with transcriptional modulation of important prostate cancer growth control genes.
In addition to nuclear WT1 protein, we and others have observed WT1 protein in the cytoplasm of several tumor types , and this is consistent with the presence of a cytoplasmic localization signal on the WT1 protein. Although the exact function of cytoplasmic WT1 remains to be elucidated, WT1 can shuttle between the nucleus and cytoplasm as it contains both a nuclear localization signal and a nuclear export signal . One caveat is that cytoplasmic WT1 protein could be of one specific isoform, as antibody staining cannot distinguish amongst the various isoforms of the WT1 protein. It is possible that cytoplasmic protein is transcriptionally inactive, indeed the phosphorylated form is thought to be retained in the cytoplasm [50, 51]. Another possibility is that the cytoplasmic function is post-transcriptional; surprisingly, it has been shown that both +KTS and -KTS isoforms can function as shuttling proteins and both associate with polyA RNPs and polysomes.
One surprising result was the pattern of EGR1 expression. Although EGR1 has previously been reported to be elevated in high grade prostate tumors (GS 8-10) , our results demonstrated that EGR1 expression was not significantly elevated in tumor tissues relative to non-neoplastic tissues in paired T3 stage samples. This trend was also consistent in cell cultures; the non-tumorigenic RWPE-1 cell line expressed greater levels of EGR1 than all tumorigenic cell lines tested. These discrepancies in EGR1 expression can primarily be attributed to two reasons. First, we measured EGR1 levels in paired samples within the same individual, while the aforementioned study examined tissue samples from unrelated individuals. Secondly, the tumor samples were all Gleason Score 7; so the possibility remains that EGR1 levels might be elevated in higher grade tumor samples. Clearly, the topic of EGR1's activity as a tumor suppressor or oncogene remains highly debated .
Previous microarray studies have primarily examined prostate tumor tissues as a whole, containing both epithelial and stromal cell types, and compared their expression patterns to adjacent non-neoplastic tissue or normal donor prostates [9, 10, 55]. However, a comparison with the genes expressed significantly higher in our microdissected tumor epithelial samples suggests that some of the reported tumor genes in the literature are actually expressed in the stromal cell compartment and not in the epithelia. For example, SPARC expression appears in several tumor microarray analyses [56, 57], but was identified in the stromal compartment in our studies and in other tumor types [58, 59].
Our analysis of differential expression between adjacent stroma and tumor epithelia showed that the cytokines, CCL5 and CXCL 13, and the growth factors, IGF-1 and FGF-2, were upregulated in stromal cells. Additionally their expression was elevated in non-neoplastic paired frozen prostate tissues. Both IGF and FGF axes are known to be upregulated in prostate tumors [25–27] and several groups have shown IGF-1 to be expressed in prostate tumor stroma [26, 60, 61]. Overall our results are in agreement with other studies that have shown elevated expression of genes such as IGF-1, FGF-2, IGFBP3, desmin, vinculin, and vimentin in prostate stromal tissues [7, 27, 62]. These results demonstrate that genes differentially expressed in tumor cell compartments include those important to growth regulation, and in particular, genes of the IGF axis are expressed.
While it is difficult to make direct comparisons between this study and others that used LCM to examine altered expression in tumor vs. normal epithelia, we and others observed genes elevated in prostate cancer epithelial cells including kallikrein proteins 2 (KLK2), and 3 (KLK3, or PSA) . KLK2 and PSA are androgen regulated serine proteases expressed in prostate epithelial cells and upregulated in prostate cancer . Two ets related transcription factors observed in this study, ets-related gene (ERG) and Sam pointed domain ets transcription factor (SPEDF)  are known to be upregulated in prostate tumor epithelial cells [64, 17, 18]. The importance of the ERG gene is supported by its frequent involvement in complex rearrangements with a host of other gene fusion partners. Overall the expression of these genes in prostate cancer epithelial cells is consistent with their potential roles in tumorigenesis.
Fewer studies have used LCM to examine gene expression in stromal samples, but the SELECT cancer prevention trial identified expression of two angiogenesis genes elevated in stromal tissue: angiopoietin1 (angpt1) and the endothelin A receptor (EDNRA), genes that we also observed in stromal tissues . Additionally, gene families upregulated in normal stroma relative to reactive tumor stroma included: caveolin (CAV), tropomyosin (TPM), transforming growth factor-B (TGFβ), Laminin (LAM), and EDNR . In our study, TPM1, TPM2, CAV1 and CAV2 were elevated in stromal compared to epithelial tissue. Thus, while a direct comparison cannot be made between our unique study of tumor epithelial and stromal tissues and other studies focused predominantly on one tissue type, there are indications of common patterns of gene expression. Importantly, using this tissue specific approach novel gene expression patterns can be more clearly identified.
In the present study, LCM and microarray analysis were used as tools to identify distinct gene expression patterns in prostate cell populations and led to the identification of genes of potential significance in prostate cancer, such as WT1. As WT1 has already been investigated as a clinical marker in acute leukemia, data demonstrating WT1 expression in prostate tumor tissues may point to its usefulness as a potential marker for prostate cancer.
Results of the microarray analyses are posted at NCBI's Gene Expression Omnibus and are accessible through GEO Series accession number GSE 20758 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20758.
early growth response 1
GATA binding protein 2
chemokine (C-C motif) ligand 5
chemokine (C-X-C motif) ligand 13
insulin-like growth factor 1
insulin-like growth factor-1 receptor
insulin-like growth factor binding protein 3
fibroblast growth factor-2
laser capture microdissection
quantitative real time - polymerase chain reaction
benign prostatic hyperplasia
optimal cutting temperature
formalin-fixed paraffin embedded
We greatly appreciate the Ohio State University Prostate Cancer tissue Bank for providing frozen tissue sections with demarked tumor regions and Dr. C. Magi-Galluzzi for providing paired frozen tissue samples and IHC advice. Funding was provided by NIH-1CA331160 (GF), NSF-MRI DBI-0320858 (EM) and Ohio Board of Regents.
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